RNA id: TU81659


Basic Information

Item Value
RNA id TU81659
length 1669
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G60570
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51358476 ~ 51360167 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gggtgTCCAAAagttttcataccactgtatttcTGGGTCTAACTCTATGTTCCTTTTCAGGAAAGTAAAATCAATATAAACTACTACATTTTTGCAACAGCAAAACAGGGCACTAACAGGACAGTAACAGGACAGGCTCCATGTTGAGTTGGGATAAGAACTCCTGCATTGCTCACCGGCCACACTTTCTGGTTGGGAGTTCCGAGGACCCGGAGCACACAGCACAGCTGCTCGATATCATTCTCTCCAGGAAACAGGGGAGAGTTATTCAACAGCTCCCCAAAAATACAGCCCACCGCCCtgcaacaaccaaccaaccaccacaCAGCAAATACAGAATCAATAACAAACTCCACCACCATCATCTGCACTCAAATaccaccCTGCCATCTTGTGTACACTTCTAAACAAACCACATGACCAAATCCTCATACAAATattagtgcatctcagaaaattttgaatatctttaaaaagttcattaatttcagtaattcagctgaAAATGCggaacttatatattatatagatgtattacacacagagtgatctattttaagcatttatgaaaacccaaaaatctcaaaccaaacccaaagTAAGAATATAATGTAAGAccaaaagtcctgctggaaaatgaaatccacatctccataaaagttgtcagcagagggaagcatgaagctgcactgcactgactttagacttgatataacacagtggaccaacaccagcagatgacatggctctccaaaccatgctatttttaaaatgtaaggagtagaaagttcagataactgtgtgaaaatgtaaggagtagaagtaaacaGTGAAAAGCTGAAGAAtaattacttcagtaaagtatagataaccacaTTTTCTAAGCATTCTAAGTATTTGTACCTTGTTACATGACACACCTGCTAATAAGTCAATTGAGAATAACTAGGGTTAGTTATTAAGAATAAACCTACCAGATATCCACTCCTTCATCGTATTTCCGAGCACCATACAGAAGCTCTGGAGCTCTGTACCACCTGAAAAACAgctattattttgtcattttacttTTCCTTCTagagaaaagacaaagaaaaagactATAATCATCATTTGAATTGAACAAAGATGAAATCTGACCCCCTCTTTCAGTCCATAAATGcagtgtttaacatttttttttttcagatttcaaAACAGGGTGATGATACCAGGCCATTTGTATCAAGATCTAAGTTGACAAAATATTAGGTTTTGGTCtgaaaatttttaatttaaaactttatttaagaCTGATTTCTCACCTGGTGGCCACCTGATGACTGTAAAGTCTCTCTCCTTCATTGGAGAAAAGTCGTGCCAGGCCGAAGTCAGCGATCTTTAAATGACCAGTTGAACTTATTAGAAGGTTTGCAGGCTTCAGATCCTTTAAAAGAATTATGGAAACAGAACTAGAAACATATCCAGTTGTTTTCTCTCTTACACCAAAATACCAAAAGCATtaagtcccatgacttttgccatgtcctataGAAGATAAAGTGGAATGCACTggcctgtgagtgtgtgtgtggtgttctcTGCACTGAATGTGAATGTCACGTTTTTTGTTGACCTCTTAACAGGCagccatttttgtcaattttcttaTATTACATTCCAATATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81641 lncRNA downstream 10413 51347275 ~ 51348063 (-) True G60556
TU81632 lncRNA downstream 28751 51298513 ~ 51329725 (-) True G60552
XR_002650104.1 lncRNA downstream 39562 51309800 ~ 51318914 (-) True LOC111192703
TU81623 lncRNA downstream 106177 51213528 ~ 51252299 (-) True G60544
TU81483 lncRNA downstream 357544 50992488 ~ 51000932 (-) True G60464
TU81661 lncRNA upstream 4155 51364322 ~ 51442852 (-) True G60571
TU81675 lncRNA upstream 50437 51410604 ~ 51413147 (-) True G60584
TU81681 lncRNA upstream 61004 51421171 ~ 51508580 (-) True LOC103032656
TU81707 lncRNA upstream 174311 51534478 ~ 51536312 (-) False G60594
TU81708 lncRNA upstream 174311 51534478 ~ 51536312 (-) True G60594
XM_007245836.3 mRNA downstream 72307 51276303 ~ 51286169 (-) True LOC103030869
XM_022670859.1 mRNA downstream 85745 51216841 ~ 51272731 (-) True fgd1
XM_022670860.1 mRNA downstream 114764 51216841 ~ 51243712 (-) False fgd1
XM_007236937.3 mRNA downstream 621224 50657611 ~ 50737252 (-) True LOC103044996
XM_022670868.1 mRNA upstream 56053 51416220 ~ 51444657 (-) False LOC103032656
XM_022670867.1 mRNA upstream 56064 51416231 ~ 51444657 (-) False LOC103032656
XM_007245842.3 mRNA upstream 64556 51424723 ~ 51444657 (-) False LOC103032656
XM_022670942.1 mRNA upstream 86032 51446199 ~ 51460739 (-) True LOC111192719
XM_007245843.3 mRNA upstream 99269 51459436 ~ 51475848 (-) True LOC103032967
TU81451 other downstream 526276 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 2053224 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 2274543 49062621 ~ 49083933 (-) False LOC103030200
TU80460 other downstream 3439095 47816355 ~ 47919381 (-) False selenok
TU81746 other upstream 346171 51706338 ~ 51708112 (-) True G60627

Expression Profile