RNA id: TU81681


Basic Information

Item Value
RNA id TU81681
length 3716
lncRNA type read_through
GC content 0.37
exon number 4
gene id LOC103032656
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51416220 ~ 51508580 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagagagagggatagagagagggagggagaagagaaagagagagagagagagagagagagagagagagagagagaggcagagaaactCATCTGATAACAATACAGTGCAGATTGCAGAATTTTATGCTGACCTGACAATTCCCTGTAAACACACCCGTGTATCTGCTCCAACACTATAATAAATCATCACACACTTTACTTATCTATGCTTCTTGCTGCTGCACATAAGCAGAATAATAATCATACAgcaccagttaaaagtttggacacaataaTTCACCaactcagtgttttttcattattttaaatgttctgcattgttttATATAGCCTTTTAAATTTAATCTGACATTCCtcatttttggcatttttcctacttttaatcctgtttttcagtaatttaatctaattcaattgtcttattctattggcagatATCCTTGCTTGGTTTAAGCATTATTTCTTCTAAGATAAATTAACTACTAGTACAATAAAACACTGTAGTAGCagattaaatcacttaaaacaaGTACAGTGACGTTCTAAATAAGTTAATAAGTTAATTCATTCTAATAATATTAGAACCTGGATTGCTCCCTTGGTAGCAGCAGTAGTCCTAATTTGAGTCGATGTTATGGTAATGTAATAGCTAAATAGACCAATGGAGAAcaatgctaaaagctaaaattgACCTTATCTCAGTTCTTATAGTTAGACTTTAACCTTTACTGTCAATGTTTGACTGGTATATGATTGTTAAGGTGGTCTTTGAGGGTTAAGATGGTTGAAAAGTTGGTGATCCAACTTTTGAAAGCAAAGCCTGTGAGGGCAATCTGACTGGAAAACCTGCTTTTAACCACATACATGACCAACATTACCAAATTGGCTTACAAGCTTGTTGGGACTTAACAAAGATGGTCAACCAACATGACCAGCAAGAGACCAAGCTAGAGAACCAGCATGACAAGCAAGACTTGGCCAAGCTAGTTGATCTTGGTCTTACTGCAATACTGGTTTTGTTGAGCTTGGTTGGATTGATGGATTCatgcttgtagaccagctaaacttttaaaatcaatcaaaaaaaacatatcctgTGTTGGCCAAGAGCTaaactggtcaaccaacttAACCAGTTTGACCAGCTTAAACTAAATATCTTATACTCAAAGTACCTCCCCTAACCCCAGTTGTGTTTGATTGTATTTAATACTAGCCTAATGCTATTTTTCTGTAGCAGTAACCCGTACATTTAGTCTTCAATCTACAGTACTTCAGCTAATCCAGTCTGAACAGGGCTTTACAACGAATATCTCTATAGTATGATCACAGCAGGAGTGCATGAAACAATCCTTCATATTTAATTATCACCGTCTTGCATCTTTTGCATCTTTTGCATCTAAAATATTCCAGCTGTCTTGTCCTTTAAGAGCATCTGCAGGACATCAAAGCCTTTTATCAGTTCTAAACGATGCAGTACTTCGTTATCCACAGCGAACGGGAATTATCTTAGTGAAGATAATCATCAAAACTGGTCTCAAACCAACTGAATCCTTAGCGTTTTCTGAAGCTTCAGCCAAAGTGAAAAACCAAAGTAGGCttaggaatagagagagaacctcctcctcctcctcctccacactGCGTTTGTGATTgagtttttagagtttttagaGTGTTTAGAGTGTTTAGAGTCTATAGTGTGTGTTGCATTGCTTCTGCCTCCATTGTGTATCCATTTCCACCGCATTTCCAAGGCTctgagtttcagtttcagagtTTACTCTCTCCCAGACAGGCAGAGCTTACAGTCTGCTATCGATTTCTCTCTCTGGCACACAGAGTCCAGCACTGTCCGGTCTTTACGCTCATAAATCCACCATGCGGAACTGCTGGTTCCTGCtggatctgacacacacacacagagttctCCCAGAGGTCCTTGAGTCCTCTTGTTATTTCACAgcagtaaatgttttaatagtgtTGCTGGAGCTCAGAAACAGATGTTACATTGGTTTTAAATTGATTTTGCTCAACATCAGCGAGTAGCGGAGTAACAGCAGTGGCAGACTTACCAATACATTACAATTTTTCAAAACTGTAAGATTTTGTGCTTAACCATTGGAACCCCATTGACGCACAACTGAGACTGTACACACTCTAATCTAACTTTTACTGAAAAGAAAACTATTGTGTGAATTGATTTAAAGGGTAATCTGTCTGGAAAAAACTGCTTTTAACCACATACCTGACCAACATTACCAAACTGGCTTACAAGCTTGATGGGACTTGATTTAAAGTCTGATTTAAAGTCTGTTCTGTTCATTCAAAAATAATTTTTGGGTAAAATCGTGATCAAAACATGATCAATTCCATGAAGATTCGCAAATTCTAGAAGCAGTTACATctcaaataaagacatttttttaacaagctCAGTCTTTTTTGGTATAAAGGTATAAAAATAATGGCATaacataactgtgttataacaagTGAAATAGGAAgtgacaaaaatgaagaaaaaacgcACCAAAATAAGCTGGGGTTCAAAGgattaaaaacatacaaattctACTTTTCTCCTCAAGATTTCtttaatataaagatatatttttatcttgaCCATAAATTTTGAAGTGGCTGCTTATGCTTATATAGTATTTGAAAGAGCCAGAGACttcagaagaaagaaaaaatggacGCTTTTTGGTtccatttttctttacaaagCAAGCCACAAATTTGTCCACCATGTTGTCAGAGTAGTCAAAGTTGAGCCAGACTCTCTTTTCAAACCAATGGGGAAAACTGTTGGAATTGGACATATTTATCCATCATGGTGTCAAAATTTGCAACCAGAGTAGAGGCCAGAGCTGCagtcttttatttctttatttttttgctagaTTCGTCCACTTCAACAAGGCCAAGTGTGTCTCAggctgccttcattgagtttacagaaCAGAAGCATTTCCAGTTAATTCCCAATACAACTTGACATGATGCAGAGCTCCACTTTCTCATGATAAAGCaccataaagtttttaaaaagaggGAAAACTAACCAAAAATGGGTAAGGCTGTTCTGTCCCTGAAATATAAGAGGATGGGTGGAGCTTCTCTTTATAGAGCAAATTATACTGCAACCATCCAGCAGAGGCACTAAGTCTGTGCTGTCTTGTGCTGTCTTACACcttattacattaaatatattgtaaattaaataaaaaataataattttattcatttaatgtaatgtatgctCATCACCTACAGCCCATCCAACACCAACATTACCTACAGTAATTActacagtaataaaaataaaaaacatccaAGTGGgttctctgctctctctttctctaaactCCTTGtgtgcattaattaatgttactaaactaaaaaaaaagattcttgaCTAAACTCTGTGTGGAAAAGTCGCTGTTGTCCTCCCCTCCCCTGCTTCTGCCACTGGCTTTAGTGCCCGATGTGCCAACGAAACTATTAACGCCGGCTGCGTTTTTTTACACGGCACCTTTCAGTTCCTCTCTGATTTCCTCTGCAGCAGAGTTTGTGCAAGAAAGTACTGCCTTTCACACAATACTACAGCTTTATGTTTCCATTGCTGTGCGGTCATGAAAATCTTGTATTAAGAAAATGCACATTGTCGCGCGGCaggttttattgtaaaaatcaGTTTACGT

Function

GO:

id name namespace
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81675 lncRNA downstream 8024 51410604 ~ 51413147 (-) True G60584
TU81653 lncRNA downstream 11909 51342696 ~ 51409262 (-) True G60566
TU81639 lncRNA downstream 43028 51306688 ~ 51378143 (-) True G60554
TU81659 lncRNA downstream 61004 51358476 ~ 51360167 (-) True G60570
TU81641 lncRNA downstream 73108 51347275 ~ 51348063 (-) True G60556
TU81707 lncRNA upstream 25898 51534478 ~ 51536312 (-) False G60594
TU81708 lncRNA upstream 25898 51534478 ~ 51536312 (-) True G60594
TU81703 lncRNA upstream 30918 51539498 ~ 51580634 (-) True LOC103045940
TU81735 lncRNA upstream 136641 51645221 ~ 51647695 (-) True G60619
TU81738 lncRNA upstream 138268 51646848 ~ 51647695 (-) False G60619
XM_007245836.3 mRNA downstream 135002 51276303 ~ 51286169 (-) True LOC103030869
XM_022670859.1 mRNA downstream 148440 51216841 ~ 51272731 (-) True fgd1
XM_022670860.1 mRNA downstream 177459 51216841 ~ 51243712 (-) False fgd1
XM_007236937.3 mRNA downstream 683919 50657611 ~ 50737252 (-) True LOC103044996
XM_022670872.1 mRNA upstream 34526 51543106 ~ 51577160 (-) False LOC103045940
XM_022670871.1 mRNA upstream 34526 51543106 ~ 51577160 (-) False LOC103045940
XM_022670873.1 mRNA upstream 93732 51602312 ~ 51616374 (-) True abtb1
XM_007245847.3 mRNA upstream 148821 51657401 ~ 51662840 (-) True LOC103034245
XM_007245855.3 mRNA upstream 394644 51903224 ~ 51973896 (-) True slc6a8
TU81451 other downstream 588971 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 2115919 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 2337238 49062621 ~ 49083933 (-) False LOC103030200
TU80460 other downstream 3501790 47816355 ~ 47919381 (-) False selenok
TU81746 other upstream 197758 51706338 ~ 51708112 (-) True G60627

Expression Profile