RNA id: XM_007245843.3


Basic Information

Item Value
RNA id XM_007245843.3
length 3009
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC103032967
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51459436 ~ 51475848 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAACGCGCCTTCTGTGATACGATTGGCTAGCAGGTCACGCACTAGCCAATCCTATAGCGAAGGGAGGCGGGACGTGTCCCAATACAAGTGGGAAATACAGGCTGGCTACGACACTGACTTTATGAAGAGTTCAGAGAGCTCTGCGCTGCTTTAGCCTCCTGTTAAATTTGCTCACATGGAGAAACCACTGATATCAAGTGATTACGGACCCAGCTATGGCACAGTGAATGCCCCtacagcagcggcagcagcgggGTTCCCAGCCATGGCGGCCGCCCCCGCTGCAGCCACTAATGCTCCGTCAGCTCCCCCCGCCAGTATGTTTGACAGCGTGCCGGGCTACGAAGGGACAGTGGCAGGTGGAGGAGGTGGGTACCTTCCTCCGCCTATGCCAGCAGTGCCGATGCCCGTACCAGAGGCTGGCCCTGCTCAGCCCAATTGGAAcattcctTCTATCTCAGAGGACGCTGCTCGTGAGGCCTTTGTGAACTTTGCCTCTAGTAAATGCTGCTACAGCACTGGTCCAGCCAAAGATGGAGTCATCACCAGCATGGAGCCTTTTAACACCTACAGGTATCGCTTGGAGACCttcacagagtccagatctacAGAATGGCTTCATGAACCCTATTCCAATCAGCCTTTAGATGCAGGTATGCAGCGTGCACCAGGACCATGGGAGATAGCAGCCCAGATGCCAGGCTTCTTCCAGGACACCATACAGAACATCAAAGTGCCCTACACCTCCTCAGTTAAGATGTGTCATGCGTGTGTGGGCATGGGGAGGGTGCCGTGCAAGGACTGTACTGGTTGCGGAAGTAAAGTTTGTTGGGTGTGTAACGGCAGTGGTTTTCGCCAGACCAATGATCGCTGCATGCACTGCAACGGCCGCGGAAGAGACAACTGTTTTAAGTGCAGTGGGAAGGGCACTAATGAGTGCAGCACCTGCCGTGGGAGAAGCCAGCTTCTTGTATTTATCAATCTCAAGGTTCAGTGGACCAATAATAAAGAAGATTTTGTGGTGGAGCAGTCGAGCGGTCTGAGAGTGGAGAACTTCAGTAAAGTCTCCGGCAGGGAAATGTTCAAAGACTCCCAGTTTAtgCTTTACCCAGTGATGGGTTTTCCGGACCCTGCAGTGGCTCAAGCTTCTGAGCGCTTGATAAGAGAACACATGTCCAAATATGGACAGATGGTCCGCATTCTTCAGCAGCGTCACACGATTGAGCTGATCCCTGTAACACGAGTGACCTACGCATGGAAAGGGAAGAGTCATCTGTACTTCGTGTTTGGGAATGAGATGAGTGTGAATGCGGAGGACTACCCGGCCACCTGCTGCTGCTCAGTGATGTAGTTCAACACAGTGAACAAAGTCCTGGAGATGAAGAAATGGAATTTAGCACAGTGTCCTGTCCTTACATACACACAGTTCAGCACAGTGTAATCAGTAACtggttttggtttttttttttgcgttaaCTCAATTCAGATTAgtcaaaaacacactttttaccTCTGCATATCAGCTTGGTCAACAATGCATATTCAAGCTCCGAGTGCTCCAGCGGGCTAAGCTCTAtatgccactataatcaggagatcgtCTGTTctaatcctgtttatgtagcttgccatcagctgctggagccctgagagagcacaattggccttgttctttctgggtgtgtagatggcACATCTagagtgatgtctgcagcacaaacCGAGTCTCTGCGGTTTCCTCTGAGCGAACTGCGATGCTACTCGGCATGCTACTCcgacatgtgtcggaggaggcatgtgctagtcttcaccctcctggtgttggggcatgactagtgatagggggagtcctagatagtgggttgggtaattggctctGTAACATTGGGGTGAAAATgggataacaaaaaaaaaaaaactaaatggaTATTCAGTTGATCATATTTAGTTAAAAACATTAGTAAATGCCTTGGAgctaaaattaatgaaatgttgtgttaaaacattttttattctcaAACTCCTGATGACTGTGGGGTTGACAGTATATAAACTGATAAGCAAgcagttagacagttgcacTGCTCTAGAGCTGTGAagacatttactgtatatttcttcattcaaaaatagaacagaaaaatacatttgttcAGATAATGTTTttctcactttcagaccaccatgcccatgtTATTTTCATACTCTTGCAGCCATTGATGTTTAACCCTTGATCCTGTCTTAGAaggttttacctttaacttattAACCCTTGGTTACTAATTAACAAACCTTTCCGGGGTGTGTTACAGCAGGCTAAAGATACTTAACTGTGAATGAAAAGTACTGTTctagacacatacacacacacacacacacacaagcccccccctccctccccctctACACACGACTGGCTATTGAAGTAGTGCATTGCCTCAATTCTGcctgcatattgtgatatttagcAGAGATGCACATTACAATACACTGAATTTAATGCAGGGAATATACTTAATGTGCAGTTGCAACATATGATCACACAAATCCATTGCATACATTAATGTTTTTACTAAGTATACCTTGAAATAGaactacatataatataaacatatctAAAAAATGGACTTTGAATATCTTTGTTGAAATGTTTTATGTCCTCAAAACAGCCAAATTGAAGTTTAGCCAAAGAATTATACTATGAAGCAAGTGCTGTTTACCCTGTGAAGAACTGTAAGAATTCACTGTGAAATTTAAGCCTCACTGATGCCATTAAAACTCAGCCAGAGGTATAGCAGGAGTATGAATACTTAGACGATAATGAAGAAACCATTTTATAATATTTGCACTTACTGACTGCTTTATGGTGAATGATGCTTTATAATATTCGTCTCGTTATGGatgtattattgttttgtagttttatatAATCATGTTTCTGGTAAATACATCTTGGACATTATAATGCaagttttaatacattaaaatatatatatttgtatactaAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81661 lncRNA downstream 16584 51364322 ~ 51442852 (-) True G60571
TU81675 lncRNA downstream 46289 51410604 ~ 51413147 (-) True G60584
TU81653 lncRNA downstream 50174 51342696 ~ 51409262 (-) True G60566
TU81659 lncRNA downstream 99269 51358476 ~ 51360167 (-) True G60570
TU81641 lncRNA downstream 111373 51347275 ~ 51348063 (-) True G60556
TU81707 lncRNA upstream 58630 51534478 ~ 51536312 (-) False G60594
TU81708 lncRNA upstream 58630 51534478 ~ 51536312 (-) True G60594
TU81703 lncRNA upstream 63650 51539498 ~ 51580634 (-) True LOC103045940
TU81735 lncRNA upstream 169373 51645221 ~ 51647695 (-) True G60619
TU81738 lncRNA upstream 171000 51646848 ~ 51647695 (-) False G60619
XM_022670868.1 mRNA downstream 14779 51416220 ~ 51444657 (-) False LOC103032656
XM_022670867.1 mRNA downstream 14779 51416231 ~ 51444657 (-) False LOC103032656
XM_007245842.3 mRNA downstream 14779 51424723 ~ 51444657 (-) False LOC103032656
XM_007245836.3 mRNA downstream 173267 51276303 ~ 51286169 (-) True LOC103030869
XM_022670860.1 mRNA downstream 215724 51216841 ~ 51243712 (-) False fgd1
XM_022670872.1 mRNA upstream 67258 51543106 ~ 51577160 (-) False LOC103045940
XM_022670871.1 mRNA upstream 67258 51543106 ~ 51577160 (-) False LOC103045940
XM_022670873.1 mRNA upstream 126464 51602312 ~ 51616374 (-) True abtb1
XM_007245847.3 mRNA upstream 181553 51657401 ~ 51662840 (-) True LOC103034245
XM_007245855.3 mRNA upstream 427376 51903224 ~ 51973896 (-) True slc6a8
TU81451 other downstream 627236 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 2154184 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 2375503 49062621 ~ 49083933 (-) False LOC103030200
TU80460 other downstream 3540055 47816355 ~ 47919381 (-) False selenok
TU81746 other upstream 230490 51706338 ~ 51708112 (-) True G60627

Expression Profile