RNA id: TU81920


Basic Information

Item Value
RNA id TU81920
length 2055
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G60739
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51846785 ~ 51848839 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTTTATTGTCGGCCTCGAGAAAGAGGCCGCTCGGAGAAATGGATCCAGCCGCGGCTGTTCATTATcttttcacagagtatttacACATCCATCAGACACGGTTCCAGAGACACGGTGGAGGAGCACACCGGTTATTAAACAGCTCTAGTGCTCATCCAGCACACATTACCCACAAATCAACTGCTGCCATGTGTGTGCAGTCtgaaaggaaataaaaaggacagaaaaataaaccaaaaaaatttaaaatgaactggacATTTGTGATATGTACACATGCAACTCCACAGTCAGTGTTAGTTATAAACCACAGATCACAGGCAGCTGCTGTTCTGATTGTATTCTTTGGGTTGGAGAAAACATTTCCAATCCCAAATCAATACGAGTGAGGGGTCTTTTATTAAACGTAACAAaacttataattataaaaacactAATACCTTCTCATAACCATATTCTGACATGATTAAGCTGCTGTATTTATACCATAGTCATCACACAAGACCttttatcatcatcataatcttTTGTTtgtccttttgattatatttgatttgatttaattttggAATGTTGGAAAAATCCAACATCTCCAACATATTAAGAATTAAATACTTTTCTATTAAAGGTTAAGGGTTTTACTTTTCCTATAAAGTTGTAATTTTGGAGATACTggatttttgtaatttattaatgacaatatacaaaatatccTTCACTATATTATAGGCAgccctttaaaataataataaactacacTAACCTGCATTAATAATTTTGTTTGCTCATTTATAGCACATTAAGGTACGGTACATATCTTTTCTATTTGACTCTCACACCTGCAAAATGGGAATAAGGGAATACAATTTGAACTTGTATTGAGATTTGATTtcttttagaacatttttacacaatgtaagaaaagaaaaatggaaatacttggttttgttctgaccatgacaaaacacacaatcattagttagttagttacgcCAGATTTTGGTAGAGATGCCACACAATTGATACCATCAGGATCCTTAATCTGACACTGGCTACTGGCATCATTTTGGAtccaaattaaacataaaaaactgaATTGTGTTTAGGGCTGATGTACACAAAGCAAAGGAGATCATATGACACCTATTCATACCTACATCATTTTTTAAACCATAACAGCAGAAGTGATGTAGTGTGATATAGATAAATAATACAGACACAAACTACCAGCAATTGATTTATGCTTGTTATtaagaaaatggccataaaatattaatactacGGCAATGTATTGGTTGTCGTAATTTTTAACATCATTTTTGTGGGTTAGTTTGTGTTACAATTATTTCTGGGGCAATATATCGTTAACACAAAAATAGTGATTGTGACAGTAAAACACTATTATTAGAATTAGGCCTGAGATGATAAACACTTACTActcagataagaagcttttttttttgtaatctccACCCATTGTTACTGGGTTGGACAATTTTGTTTCTCATCTCTGAAACTCCAATcaattaaacacacactcacgcagatgaagtgtgtgagtgtatctCACTGGCTCTTTCTGTCACTGTTGTGATTTCAAACtgaaatataacataatatagtgatacattaaactaaatttaaaaaagaaatacataaaaatattaactgatttaacaataaataaacttcaAATTGATTTGGGCTCATTGCAATGCAGCCCCTGAGAACAACCAGAAATCAAGAATAcataaaatcactttaaataataataataatacaaaaatacttaATGTCCTTCAGATGTATGATGTCCAGCAGCTCTATCCCCATAAGTTTCCCGgataaatatgcattaaaacctcccacaaaaaaaaaacagtaataaatccCTTCAGCCCCTTCACTACGGTTCAATCCTTCACCATTAGGTCACCAAAACACCACTGTGTGCTCCAGTGGATAAACGTACAATATGTGCACATAAAAATCATATAAGAAAAACAACATTCATGTGATATCCTCAAGTGTACATCTCTCAGACAGTTTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81917 lncRNA downstream 81006 51765116 ~ 51765779 (-) True G60736
TU81748 lncRNA downstream 132619 51713187 ~ 51714166 (-) True G60629
TU81747 lncRNA downstream 133693 51712617 ~ 51713092 (-) True G60628
TU81735 lncRNA downstream 199090 51645221 ~ 51647695 (-) True G60619
TU81738 lncRNA downstream 199090 51646848 ~ 51647695 (-) False G60619
TU81938 lncRNA upstream 788 51849627 ~ 51850048 (-) True G60752
TU81939 lncRNA upstream 1550 51850389 ~ 51851299 (-) True G60753
TU81930 lncRNA upstream 36724 51885563 ~ 51900112 (-) True G60747
TU81931 lncRNA upstream 47028 51895867 ~ 51900112 (-) False G60747
TU81943 lncRNA upstream 84099 51932938 ~ 51933316 (-) True G60757
XM_007245847.3 mRNA downstream 183945 51657401 ~ 51662840 (-) True LOC103034245
XM_022670873.1 mRNA downstream 230411 51602312 ~ 51616374 (-) True abtb1
XM_022670872.1 mRNA downstream 269625 51543106 ~ 51577160 (-) False LOC103045940
XM_022670871.1 mRNA downstream 269625 51543106 ~ 51577160 (-) False LOC103045940
XM_022670869.1 mRNA downstream 374927 51461093 ~ 51471858 (-) False LOC103032967
XM_007245855.3 mRNA upstream 54385 51903224 ~ 51973896 (-) True slc6a8
XM_022670882.1 mRNA upstream 200787 52049626 ~ 52063200 (-) True LOC103025058
XM_022670883.1 mRNA upstream 200787 52049626 ~ 52056448 (-) False LOC103025058
XM_022670881.1 mRNA upstream 200787 52049626 ~ 52056446 (-) False LOC103025058
XM_007245817.3 mRNA upstream 283092 52131931 ~ 52153152 (-) False LOC103025375
TU81746 other downstream 138673 51706338 ~ 51708112 (-) True G60627
TU81451 other downstream 1014585 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 2541533 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 2762852 49062621 ~ 49083933 (-) False LOC103030200
TU80461 other downstream 3927404 47843007 ~ 47919381 (-) False selenok

Expression Profile