RNA id: TU81930


Basic Information

Item Value
RNA id TU81930
length 4427
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G60747
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51885563 ~ 51900112 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttttttttgtttgtttttttgttctggatctttgtaaatatatcatacatGATTTTGACCACTAAATTTGcactaaaatcatttttttttttccggagcAAATTgaaagcagtgtgtgtatgtgtgtgtttgttaagaTTACAGAATGAAATCTGATTGAGATATTGTCACTGCATTGTCTTTTTACCAATGTCAGTAGTAATCAATAGTCAAACTACTGCCTATTAACCCCTTGTGCTCTAAGACTTTTAGAGTAATTATTACAGCCGAAATATAACTAATCTGTAACTCCATGCAAAGCAATGCACTCTGCATTATTGAGTTATTAGAATTATTCTAACAATAGTCGTAACAATACAGAAAACAAAGCCAGATACAGTAAAATGGTTCAGAGGAGTATAAAAGGGTTAAATACTACAGTAGATCTTTATGCTAAAGCCTCTGCAGTGGCGATATTTACAGAGCGTGAGCCGATTGGGGACACTTAGTTGCCAAACTTTGCCTTTTATTGTTTGTCTTAACTTCAGAGCCCGTGGATGAGCGTTTCAATAGCCAAGTTTCTATAGCAGGCCTTCCGATGATCCGGCCTATTCACTCAGCTGTGGGAATTCTGCCCTCTCTCTACTTCTTCtttaacacagaaacacactaaGCCATTCTAACGTCATCGTAGAAATaattagaatgtaaaaaaataaaaaaataaaaattagacTCAGTAATAGACTTCAAACTACATTTGCACATTGTTGTAAATTAATCTCGCTAGCACTTTTTAATCGTGTTAGGGTAagacttttttctctttttttttgtttttaagttttacattttgtgaaATAAATCAGAGATTTATTTTGTGAAGGCTTTTATTTTGCTgatacacacataaaaaaaaatctctctctatatatatacactataaataTGTACTGAATATCTTGTGTGTTCTATTTTAAAAGTTTGCTGCAGTATGACTTTTTTGATAAAGATTAAACTATGGAAAGGGAGTTGTCCATGAAATGCTGCAATTCTGTTGCAGGGAGGAATTTTAGTCAGCACATTGGATTGATTGTTgggttttattgttatttttttttctttcttttcttatgAATATCAAACgcttgtgtgtatttgtgtgtgtgttaaattgcAGTATTTTTCCGCTGACCACCCAGGGACCAAAATCGTGATAAAACTTGTGATAATACTGGTACCTTCCATTTTGTAAGTCGAAAAAAATCTGAAGGAGATTTAGCCCTGCTTTTAGCGCAGGCCgtcatttacaatatatttatgaaattcagacaaaaaaaatgtaaattggatgtttattttttctgtttatttaagattaagattaggaTGTTAAAGGGCCCACATTGTGCAAAActgaatttttaatttttctaaatGCACTCTtccctctttattatatttactgtgatttcatacatagaaaaatataagccctgtttacacctagtcactttattaattaatttaatacagatttaaacaaaaatcaaaTCACTGAAACCAGAACCTTCAGGAGGTGGACTGTGGTGCATTTTAGCCACATATTATAACAGTGTTAATGTGTCCGTCTCTTCTAAGACTTATTTGACAACCCAAACTCATCCTTGTACAACCGaaactccaaataaaagtaaactCTTCTAGTTAAAACTTAAACTCCTCCCACTATAGCCAAATCCCTCCTAGTACAGCCAAAACCCCTCCCTGTACAACTGAAACTCCTCCTAGTACAACTAAAACTACTCTAATCTCCTCCCAGTACAACGGAAACTTCTATTACTAAAGACAAAACCCCTCCTAGTACAGCTGAAATCCCTCCCTATATAACGGAAACCCCTCCCAATACAGCCAAAACCCCTATTTATATAACTGAAACTCCTCCCAGTAAAACTGAAATTTTCCCAGTACAATGGAAACTCCTCCCACTATAGCCAAAACCCCTCCTAGTATAGCTAAAATCCCTCGCTCTACAACGGAAATCCTCCCACTATAGCCAAAACCCCTCCatatataaattaaacccaTGCTAGTACAAACCAAACTCCTCCCAGTTCAACCCAAATTCCTCTCAGTGCAACTAAAACTGTGGTAACACTGTAATTTCTGTACAGCCAGCATTTTATTCAGATTTCAGTCTAATTAATCAGAgatgtatttggaatttgactCATCGCAACACTAAACGATCAGGATTCAGTGCAGATACTAGTCGCATTAAgtgaacaggtgtgaacagggtcTAAGCTGCCAAAAGTTTTGcccattttaaaccatttttttttgtaatgtgctAAAATAACAGTGCAGTAACAGATACCTGCCAGCCGGGCCATGCTTATTTACTGTACACtgaagttataaggagtgtttcagcactgcactgatttttaAATGAGACACCCAATCAGAACAGGAGTTACTTACAGTACGTTTATCAGTCTTAAAGGGACagtaacaaacaaaacaactaGAATATGGGCCCTTTAAACACTCAAACGAACTTCTGTTTCATGCCTTCAGCACGGTTTgcattgatttattgatctAAGTGCCCCTTAAACTTCCGAATCTCGAGTATTAGCCTGGAGTCAAATCAAGGCCTTTTTTTGATCAGAAATCAGACCAAAACCAGCATAACTGCCCAAAAAATGATGACCATAAtcaatgtattttatgtattcgGGTTGGTCATTAATACACACTGAAAGCATTAGCCACTTTGAAGAGTTTTTTCccctatttttactttttttttttggtttttattttattatagcaCACTTACTGTAATCCTTCTATCCAAATAGGGCCCTGGGTTGGTCAGTTAATGTTAAGATGTTACGTAGTCATTGTgtgtagaaaacaaaaatgaaatgtacattaccaaaaaaaaaaaaaaatgaaaagaaaagaaaagagaaaaagaaaaaatggtcATTTCATTTCTTGTGCTCTGCCAAATTGTTCTCGACAGTATCTTTGTCCCAAAGACTTGCTGAGACAGAGAATCATACGATGTATATGTAgtgtagttatatatatatatatatatatatatatagatataaaaaatgtaGCCGTTTTAATTAAAAGGGAAAGATTTGAAAAGTATAGAAATCTGAAATTTCAACTAAATTTGACTAAAATTGCTAAACTTTAGTATAATAAGAGAGAGCTCTTATACACATTTAATTCACGATTAATATAAATTAGCAGAGTCATGCTCCATACAGcattaaataacagtaaaatctGTATGTTCTATAAGAGCTTTAAAGTACTAataattactattaataataattattaatacaattaactatgtattaattattcagaGCTACCTGGCTCGATGTACTGTATCTGCatagaaattaaaaaatgttctaagaatCTTGATTAAATGAaatcagatagatagagataatGTAGTGTAGATAAAACTGCTGGTGCATTAAATGCAACCAAATCACGCGACTAAAGGGAATTTtcctattaaaatatataaatataataaaacactctGCCATGCTAGTGAACAGGCATGCTAGGTAGACTGTAGGTGTAGAGCACGTCCTGCTTTAGTGATAGACTGTTAATTAAgtcagataaatagataaacagAGAATAATAACCTAGCTTTGGGTAAGGATACTGTCTGTAAGGTTCTCATTAGCACTGTTGATTTGGTGATTAACTCAGTGAAATCTTTCATTGTTGTGCTTTGTAACATACTGTGAGATGTAACCATGGTCTTCCACTCGTAAGCCTCAGTAGTAATAACAGAGATTAAGACTTGTACAGTAAATGTTGTGGACCGTGCAGGAGCTGATCACTGGTCTTGCAGTATCCCTCACCATGTAAAGGGCTTCATGCTTTATACCACTGTGATTGTGCTGAAGATCCACTCGCCCATATCAGAGCAACAAACGGCAATAAAAACTAACTCCATGGGAACaaaaaaaaaaaaaaaaaaaaaaaaaggatttaaagcatatttaataAAGCATATCTGTAAAGAAACTGAATTCACATTTAGaagataaaacaaacaaacaaacaaaacaataaactgTGGACTACTTTTAACTTGAAAGACAAGCAGGGCACACTGTTAAaccaaaaaaaccaaaaaaaaacaaaggaaaagaaagaaaatcacaCATTTGCTATGGTCTGCAGACGCAGAGTAATGAGCAGTGAGGCATACAGGAACGCTCCCGAACCCTGTACGATAAAATCCAGCAGCAGGATGTGATGCGTGGACCTGGTGTCAACGAGGAAGAGTGAAGCAGACAGATGCATGAGGGCAACTCCTTCAGTCCGACTTCTTATCCTGCTGAGAGTCGAATTGCCCCTgaggaacacaaacacacagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81939 lncRNA downstream 34264 51850389 ~ 51851299 (-) True G60753
TU81938 lncRNA downstream 35515 51849627 ~ 51850048 (-) True G60752
TU81920 lncRNA downstream 36724 51846785 ~ 51848839 (-) True G60739
TU81917 lncRNA downstream 119784 51765116 ~ 51765779 (-) True G60736
TU81748 lncRNA downstream 171397 51713187 ~ 51714166 (-) True G60629
TU81943 lncRNA upstream 32826 51932938 ~ 51933316 (-) True G60757
TU81944 lncRNA upstream 42506 51942618 ~ 51944154 (-) True G60758
TU81955 lncRNA upstream 139679 52039791 ~ 52100228 (-) True G60768
TU81974 lncRNA upstream 220711 52120823 ~ 52123058 (-) True G60780
TU81975 lncRNA upstream 225363 52125475 ~ 52192826 (-) True G60781
XM_007245847.3 mRNA downstream 222723 51657401 ~ 51662840 (-) True LOC103034245
XM_022670873.1 mRNA downstream 269189 51602312 ~ 51616374 (-) True abtb1
XM_022670872.1 mRNA downstream 308403 51543106 ~ 51577160 (-) False LOC103045940
XM_022670871.1 mRNA downstream 308403 51543106 ~ 51577160 (-) False LOC103045940
XM_022670869.1 mRNA downstream 413705 51461093 ~ 51471858 (-) False LOC103032967
XM_007245855.3 mRNA upstream 3112 51903224 ~ 51973896 (-) True slc6a8
XM_022670882.1 mRNA upstream 149514 52049626 ~ 52063200 (-) True LOC103025058
XM_022670883.1 mRNA upstream 149514 52049626 ~ 52056448 (-) False LOC103025058
XM_022670881.1 mRNA upstream 149514 52049626 ~ 52056446 (-) False LOC103025058
XM_007245817.3 mRNA upstream 231819 52131931 ~ 52153152 (-) False LOC103025375
TU81746 other downstream 177451 51706338 ~ 51708112 (-) True G60627
TU81451 other downstream 1053363 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 2580311 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 2801630 49062621 ~ 49083933 (-) False LOC103030200
TU80461 other downstream 3966182 47843007 ~ 47919381 (-) False selenok

Expression Profile