RNA id: XM_007245817.3


Basic Information

Item Value
RNA id XM_007245817.3
length 2958
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC103025375
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 52131931 ~ 52153152 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCTCACGCGCATGCGCAGACAGAGGCACAGAAAGTGTGCTCGCGCTGACAGCTGCAGCCCTGATGATATCGACGAACGTGTCCAGCGCTAACAGCCTCCCGCAGAGCAGCAACCCGGGCaagaaacacaaaaagaaaagcaagaaGCACCGGAAAGCCACCAGGGAGCTCGTCCCCAGCCTGGAGCTCGGGCCCCAGATCCCGGCCTCAGATGACTTCTGCCACATCCTCACCGTCCACAGACCCACCACTCCTCCAGACAGAGCCCCCTCTCCTCCACTAAACCTCTCGCAAAGCCCCCCAGACCTTCAGCCTGTGCCCCCTGTCTCAGTCCCTCACTCTGAACCCATTTCAATCGCTCACTCTGAACCCATTTCAATCCCTCACTTGTCCCACATCTCAGCCCGTCACTCACCCCCCAACTCAGCCCCTCACTCACCCCCCATCTCAGAACCTAACTCACCCATCATCTCACCCCCACACTTACCACCCATCTCATCCCCGCACTCACCCCCCATCTTAATCCCTCCCTCACCCCCCATCTCAGTTCCAGTCACAGAGCTTCCCTCACATACAGTACTACCATCACCAGAGACAACTACTTCTTCCATAGCTCCTTCCCTTGGCCTACCTTCTGCTTTTTCCACAACTCCACCTACTCCATTAGTACTATCCAGTCAGACAACCCCACCACAGGCTCTCAGCCCACCCCCACCAAACTTTACCCCACCTCCAGCAGAACTACTTGGGTCAGATGATGAAGAGCAGGAGAATCCAGCAGATTACTGCAGAGGAGGCTATTACCCAGTGAAAATTGGAGACCTCTTTAATGGCAGATATCATGTAGTGAGGAAGCTAGGATGGGGTCACTTCTCCACTGTCTGGCTGTGCTGGGATCTTCAgagAAAGCGCTTTGTGGCCTTGAAGGTGGTAAAGAGTGCGCCACATTATACAGAGACTGCACTGGATGAGATTAAACTACTGAAATGCGTTCGAGACAGCGACCCCACAGACCCGAAGCGGGACACAGTAGTTCAGCTCATCgatgattttaaaatatcagGAATTAACGGTGTCCATGTGTGTATGGTGCTAGAGGTGCTCGGGCATCAGTTGCTGAAATGGATCATCAAGTCCAACTACATGGGAATGCCTCTGGTCTGCGTGAAGAGCATTCTCCGACAGGTTCTACAGGGTCTGGACTACTTACACACCAAATGCAAAATCATACATACAGACATAAAGCCAGAGAACATCCTGCTGGATGTGACGGATGTATACGTGAGGCGGCTGGCGGCGGAGGCAACACTGTGGCAGAAGTCTGGAGCTCCTCCACCATCGGGCTCTTCTGTTAGCACGGCTCCAAGGGACAAACAGATGGGCAAGTTGtcgaagaacaagaagaagaagttgAAGCGAAAAGCGAAGCGGCAGCAGAGGTTGCTGGATGAGAGGCTACACGATCTGCAGAGAATGGAAGAAATAGACGGCCTCGGACCGGCAGAAGGTTCTGGAAACACACGAACACTCTGGAGGCTCAGTGAAAACGGAGAAGAGGCAGACCCACATGcacagatGAATGGAAACGGGCACTATCCACAAGGCATTAAGGGCAGTCCTGAGTCAGGTTCGTACTGTCCTGAGGACGGCTGCAATGGTTACGGCCCGCTGCGTTTCTCCAGTCCTGGATCAGCCCTGTCCGGCACGTCCAGCTCCATCCTGTCTGCTACCTCGGAGTCTGCGCTCTCCACACTGTCTGGATActccacagagagagacagccaGCGGTCACTCTCCTCTCCAAACAATTTCAGTGCTGCAGATTTCTTGGTGAACCCTCTTGACCCTCAGAATGCGGATAAAATTTGCATCAAGATTGCAGACTTGGGCAACGCCTGCTGGGTGCACAAACACTTTACCGAGGACATCCAGACACGCCAGTACCGAGCGGTGGAGGTGCTGATTGGGGCAGAGTACGGCCCTCCGGCAGACATCTGGAGCACAGCATGCATGGCTTTTGAGTTGGCCACAGGGGACTATCTGTTTGAGCCTCATTCAGGGGAAGACTACACTCGAGATGAAGatCACTTGGCTCATGTTATTGAGCTCTTAGGCGCCATTCCTGCTCATTTCGCTCTCTCAGGAAGATACTCAAGAGAGTACTTCAACCGCAGAGgtgagcTGAGGCACATCAGTAATCTGAAGCCGTGGGGTCTGTTCGAGGTGCTGCTGGAGAAGTACGAGTGGCCGCTGGAGCAGGCGGCTCAGTTCAGTGACTTCCTCCTCACCATGCTGGAGTTCGAGCCGGAGAAACGAGCGACTGCAGCACAATGCCTGCAGCACCCCTGGCTCAGCTCCTAACACACCTACACTCTCTCACTTCTGAAACCACCACACTCTCACCACTGTCACCGTTAGTGCAGTCTCTACGTCTCCAAGGTCAGTTTGGTACCCTGTCCTCTCCCACAGACACGCGCACTAGTTTCAGAACGTCTTGTCAGTATTTATAGCAAAAGACCGAAGAACCCGTACTCTGAGCACATGGTATTCTTAGCtagaacctaaaaaaaaaaaaaactatgaatttctcttttttatatatatataaataaataaaaatataaatctatTTAAAGAAGCTTTTGATCTCTCTGTTGTTGGAGATGAGACGTCTGTTGTCTGTCGACGGTTTTCATCGTATGGTCatctctatgtgtgtgtaggaTGGTCacatgtttgtttatatatatgttacaaTAGTGCCTTGACATGccctaaagtaaaaacaaaagaaaaagtggaatatgaaaaaaaagagcattcacttttttatatatttgttcgCTGTGTGAGGAATGCTTGTTTGTGAACATACAGCACTGTATGAAGACTTGACAAAATAAAGATATGATCTACTGAACCTGTGTACTACCAACAAATAAACCATCACAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81976 lncRNA downstream 3784 52126117 ~ 52128147 (-) True G60782
TU81974 lncRNA downstream 8873 52120823 ~ 52123058 (-) True G60780
TU81955 lncRNA downstream 31703 52039791 ~ 52100228 (-) True G60768
TU81944 lncRNA downstream 187777 51942618 ~ 51944154 (-) True G60758
TU81943 lncRNA downstream 198615 51932938 ~ 51933316 (-) True G60757
TU82004 lncRNA upstream 104975 52258127 ~ 52266433 (-) True G60798
TU82011 lncRNA upstream 265556 52418708 ~ 52419003 (-) True G60805
TU82013 lncRNA upstream 270790 52423942 ~ 52478278 (-) True G60806
TU82017 lncRNA upstream 306873 52460025 ~ 52511578 (-) True G60809
TU81991 lncRNA upstream 331277 52484429 ~ 52493904 (-) True LOC103028851
XM_022670882.1 mRNA downstream 68731 52049626 ~ 52063200 (-) True LOC103025058
XM_022670883.1 mRNA downstream 75483 52049626 ~ 52056448 (-) False LOC103025058
XM_022670881.1 mRNA downstream 75485 52049626 ~ 52056446 (-) False LOC103025058
XM_007245855.3 mRNA downstream 158035 51903224 ~ 51973896 (-) True slc6a8
XM_007245847.3 mRNA downstream 469091 51657401 ~ 51662840 (-) True LOC103034245
XM_022670889.1 mRNA upstream 5410 52158562 ~ 52307803 (-) False plxnb3
XM_022670890.1 mRNA upstream 5410 52158562 ~ 52257188 (-) True plxnb3
XM_007245821.3 mRNA upstream 157177 52310329 ~ 52333085 (-) True LOC103026406
XM_007245825.3 mRNA upstream 193226 52346378 ~ 52423002 (-) False LOC103027481
XM_022670891.1 mRNA upstream 193226 52346378 ~ 52386836 (-) True LOC103027481
TU81746 other downstream 423819 51706338 ~ 51708112 (-) True G60627
TU81451 other downstream 1299731 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 2826679 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 3047998 49062621 ~ 49083933 (-) False LOC103030200
TU80461 other downstream 4212550 47843007 ~ 47919381 (-) False selenok

Expression Profile