RNA id: XM_007245821.3


Basic Information

Item Value
RNA id XM_007245821.3
length 7278
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC103026406
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 52310329 ~ 52333085 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTCCTGCTCCTATTGGGCCACACAGCTCACAGTACTACTCTGACCCTCAGGCTATCAGACAGCGCTGCGAGCACAGAGCGGCTTAAACATGGACCCTGAAGAAAGTCGCTCGCCGCGCAGGTTTATTACAGCCGGTCGCTCTCTGTGTATCTCCTGAGAGTGATCTTTAGCCGCTTTAGGGGCAGAGAATTATCAGAAAAGCGGGTAGATAAGAGAGGCTGGTGAGTTGGAGCGCGTTTACTCGGGCgagcagacagagacagagaggcgGACACTGTGAGGAAGTTATGCTCTTACTTAACTAACCTACTGTAACTTTGTGTTTATTCCACTGTAAGTACAGATTCGTGCTGCTGGACGGCTCGAAAACCTGAATTAACAGCGGGGAGTAGcgcttatattttatttttcgcTGTGTATACTCTTAAGCTCTTTATTTGGCTAGCTAACTACCTGTTTCTAACGTAACTTACCGTTTTGTGCTGATGCTGTTTTCGCTGTTGTTCCGCTGTAGTTGGCTAACGTTCATTCGCCACTaacgttagttagcttagcatagcttagcttagcatagcttagtCATTTTCTATTAGTTTCCTATTGAGCTGCAAGCTAACCAAACTTTAGCGCTGATTTGATGAAGTTTGAAGCTTATTTtgtacagttagctagctagctttaacTACCTCAGGAAGAAGGTGGATACAAAATATAGTAGTTATATATTAGGCACATATATCTGCTATATAATAGcagataacatttttaaactaggttagctaacttagctaggtTTACTAGTTAGTTAACCTTGGTtacctaacctaactagctagctaactaacttagctagttagctatctaggttaacctagctaacctagctagttagctagtttagtgGTTTACTTAAGAACAGGACtgaacaataatttaatatcaatatatatcacGATAATAAAAGTTTCAATAATTGTAATAAGATTGTTTTCAGTATAAATTTCAATATAACCTATTCAGCCAACTAGCTACATTTTTACAGCACCTGTAACTATATTAACTGACATTCATTACAAGGTGCTTTAATCTAACAATTATATGAATTCGCTTACTTTTTTGTAATTGAGCTAAAAAAGTTTGTAGTTAGACATCTGTGGGTGTTCATATCGATTTCAAAAGTATAGCTAGCTATAGAGCTATAAGTTGGTTGTTAAAACCTAGTGTAATCATTATAAAACGTGTATACTGCGcagtaaaacacagtttgtgtttgtattgtattttaggTAAGAAAGAACTGGAACTAAACCAATaatttacattactttacattacatttgataCTACAGGGTTGAGCTATATCTTGCATAACTTACCAAAAAgtcttgtttttcattaatatGTGCTGAGCAATACTGAAGACTGTTTGTTTACTAGTTAAATAACATTAGAGTGCCAGCAACAAAGCAAATATGTCTGGGCTATATTCAAAGCTCCCCCCTCAGCTTAAGAGGCCTGTAGTGAAAAAAGCGGTTTTTGTACTGTTAGCTGCTTATGGAGTGAAAAAGCTTTACCCGTACATTTCTGGGAGGCTTAAAAGGGGAGCAAGTCGTGCACACCTGCCGCAAACCAATGGAGAGCCTCTGGAAGTGGTTGAGCGGCGGAGGAACAAGAAGAGCTCTCCAGCAGTCAACCGAGAGTTTCTGGAGCGCCTAAGCCGTCTGCTGCGCATCCTTTTCCCACGGCTCTTCTGCAAAGAACTTGCACTTCTGGGCTTCCACTCCCTGGCACTGATTTCCCGCACATTTCTCTCCATTTATGTGGCCAACTTAGACGGCAAGATAGTAAAGACCATAGTCAAGAAAGACCCCCAGGCTTTCGTGTGGGAGCTGACCAAATGGCTGCTCATTGCCATTCCTGCAACTTTTGTGAATAGTGCTATCCGTTACCTGGAGGGCCAGCTGAGCCTGGCCTTCCGCACCAGGCTGGTGACCCATGCTTACCGGCTCTACTTTAGCGACCAAACCTACTACCGTGTCAGTAACATGGACGGCAGGCTGGCCAACCCTGACCAGTCTCTGACGGAGGACATGGTCATGTTCGCCGCCTCCGTAGCCCACCTGTACTCCAACCTCACCAAGCCCATTCTGGATGTGGTCATGACCTGCTACACCCTCATTAACATAGGTCAATCCAAGGGGGCCAACACCACCTGGCCATCAGTTATTGCCGGGATTGTGGTGGCCCTGACTGCCAAGATCCTGAGGGCATTCTCGCCCCGCTTCGGCAAGCTGGTAGCTGAGGAGGCCAAGAGGAAAGGGGACCTGAGGTACATGCACTCCCGCATCATCGCCAACTCAGAGGAGATCGCCTTCTACGGAGGTCACAAGGTGGAGATGTCGCAGCTGCAGCGGAGCTACAAAGCCCTCCACTCGCAAATCAACCTGATCCTCTTCAAGCGCCTGTGGTACGTCATGCTTGAGCAGTTCCTCATGAAATACCTGTGGAGCGCCTCCGGCCTCGTCATGGTCGCCGTGCCCATCATCACCGCCACGGGTTACTCTGAACATGATTCAGAAGATGTGAAGCAGGCGGCAATGGTGATGAAGGAGGAGGATCTTGTGAGTGAAAGAACGGAGGCCTTCACGACAGCCAGGAATCTTCTGAATGCAGCGGCTGATGCTGTGGAGAGGATTATGAGCTCGTACAAAGAGGTGACTGAGCTGGCTGGCTACACGGCGCGAGTGTATGAGATGTTTGAAGTGTTTGAGGACGTGCGTGTCGGGGTGTATCGGCGCTCAGCAGAAGAAGAACGGAGTGGAGGGACGCGATCTGGACTGCGGGAAGTGAAACATGGTATGCGGGTTGATGGACCCTTACAAATTGGAGgtcAAGTGATTGACGTCGATCAAGGCATCAGGTGTGAGAGTCTGCCCATTATAACGCCCACAGGTGATGTGGTGGTGTCCAGCCTCAATATCAAGGTGGATGAAGGAATGCACCTGTTAATCACGGGGCCGAACGGCTGTGGGAAGAGCTCGCTGTTCCGGATCCTGAGCGGCCTGTGGCCCGTCTACAGCGGCGTGCTCTACAAACCCCCGCCTCAGCACATGTTCTACATCCCTCAGAGGCCATATATGTCAGTGGGCACACTGCGGGACCAGGTTATTTACCCTGACACGACTCAGGAGATGGTGGAGAAAGGCTTCACTGACCAGCAGCTGGAGGGAATCCTGCGCACTGTCAACCTCCTCTACATCctggagagggagggagGTTGGGACGCAGAGAGTGATTGGAAGGATGTCTTGTCTGGAGGCGAGAAGCAGAGGATGGGTATGGCCAGGATGTTCTACCACAAGCCTAAATACGCCCTCCTCGATGAATGCACCAGCGCCGTCAGTATTGATGTGGAGGGCAAAATCTTTGAAGCTGCAAAGGATGCTGGGATTGCACTTCTCTCCATCACACATCGTCCATCTCTTTGGAAGTACCACACCCACCTGCTGCAGTTTGACGGAGAAGGCGGCTGGCGCTTTGAGAAGCTAGACGCCTCCACCCGCGTCTCGCTGCAGGACGAGAAACTGCGGCTGGAGACGCAGCTCTCGGGCATCCCCAAAATGCAGCAGCGTCTGGCCGAGCTGTGCAGCATTCTGGGGGAAGACAGCAGGCTGGAGAGCCCTGGGGagcagggggaggaggaggaggagaaggacaGAGTGAGGGAGCAACAACAGCAAGAGGAGAGAGATGTGTTCCCTGCTGAACAGGAGAAAAGCCTTATGGAGTGATTAGCTGCCAGGTGACAGAGACGCAGTCAAGGCCAGcagagagcgagtgtgtgtgtgtgtgtgtgtgtttgtttctgtgtgtggaGGTTGATGAAGACTCTCAATCAGAAATGTTAGTAGTTCAGGGATAGTGTTTAGGGCCCTTTCCAAGCTGTGAGCTGCTCTGAGCATatttgtgcatgtgtgagtgCGGGTTGTGTGcgctctgtttctttttttcttttgttttgtctgtgtgtgtgtggagtgtttgaAGCTTAGCGTCCcagcccgtgtgtgtgtgtgtgtgtgtgtgtgtgttagaggtggGGGGAAAGGCATGAGGCAGCTGCCAGCTCTTCCAGGTGCGGCGGATGATGAAAGCACCCATGAAAGCTGTTCCATCCCTTGTTATTTCAATTCTCTGCAGATTTCTCTCAAACTCTCTGGCACCTAGGCACcggtgtgcatgtgtgtgtgtatatgtgtggatGTATGTGCGTGTATTTGTATGAGACTCATGAGAAAGGGCTGCTGTCAGATCAGTGACTGCATATACGTGCGTGTGAGTTTGCAGTACTGTAAGTACAGTTGGTTTTAACAATACTCAGCTTCTCACCGTGCTGATGAAGTGTTAGATTACCACTTAGTGCTGTAGTTTTTCCTTTAATGAGAAGGAAAACCGTTTAAAGGGtgaaaaagttaaagttaaccTTAAACTTAACTTCGTATCGTAACCACTAGCTTTTCAGACTGAGCGTTTTTAAGAAAtctgattgtttgtttgtttgatttcgTGAATAACAATGAGGCAACGGTGGCCATTGAATGTTTTCTTGCTTGTCGTTTTGTAGAGGTCATGTCCACTGCCGAGGTCAGTACTGTTCACTCCAGGGTTGGGCGGTAATATAGTCATATCGCCATATCACCTACTTCAATTTCTCTCCCACTTTTCTCCTCAATTTGGCTATGCCAATAATCTCCCCCAATCATTAGTGATGtcccaacaccagaagggtgaggACACATAAAGTCATACTGCTGCTGAtgcggaggaaagcgcagcgactaggttctgatacatcagctcacagacgcctcgtgctgatcgacatcgcTCTAGGAGTAATGAGTGGAAAAGAGCTCTATATTCCCACCTAGAAAATGCAAGGCTAGTTGTGccctctcggggctctggcagctgatggcaagctgcatgacagggattcgaaccagcgatctcctgatcatagtggcagcgccttagtctgtTGAACCACCCGGAGCCCCTTAATTGCCTACTTATAATAAAGACTAATGTTATTAGCACAAGTAGCATATTCACAATTCTTAGTTTTTATATGACTTCAGCGATTCATGACTAAGTGACTAAGTGAACACACTTTTGTTTaaactaataatttaataaatgttgaACTATCACTCTGACAGCAAAGCTGAATGTCGATCTGCGGCAAATCCAGAGAGAGAAGCTGAATTAGCATAGTTAGCAGATTTTTGCTTTGGTCTGGCTCAGTCTGTGCTgattaactctgattaactttttTCATCAGTTGCAGTCAACCATTAGAGTCTAATCTAGTAGTGGATATTGGATATTAGTCAGAGACTGTCTGAACACCTCCTGTCAGCAGTAGTTTCTAATTTTAATGTtgtgttccaccttaaataatgcagcaacttcttttatcatttaaggtggaacgttAAAAAGCAGCCAATAACTGCCTTGTACATAGAAAAGCCACTGATACATAATCTGCTTCTCACCTCCAGCTCCCTCTGTAGTCTGTGGTACAGACCATGCTGACCCCCATTCCCAATTATGACCTTACCCAAAGCTGTTCTTGACCTCACCATTTTTTGTTTTGGGTCAGTGCAATGACCGCAGCATGCTGTTGTACCTCCATGTTTAATCTGTGGCCCCCTGATTCTGTTTAGATCAGCAGCaggttaatgttttaatgttaaatattaccGTTATACCGCCCAACCCTGGTTTACACAATCAATGGGAGTTGATTCTGAGGGAGTTATTTACGTCCCTTTTTGCTTAAATCTTTGCTGTAGAGGTCTGTAGCATTTTATATTTCCTATTTTCTGAATTTCATTTCCAGTGCATATCATTTCACTCAGTACAAATTGGACTAAGCGCAGATAGATTTAGAAGAAGGGCTTCTATTCTTTCAGTTTCGCTTAAAAATCAATTAACAGAGCCAGTCAGGTAACCTTCTAGTGTTCATGTTTGCACAGATtacacagctcacacacacacttacaaataaAGGTGTTtcagagttgttttttttattcaatgtcaTAGAAAAGCTATGACCGCATTTTGGGGccactttaagaaaaaaagaattgtaGACTTTGAGgaaaaagtcataatatttcaagaataaagtTGTGTGTTTTAGAATAAAAGTTGTAATATATGTTGGAAATCATTTGAACATAATATTGTAACTTTTTATAGTAgtagtgctgctttaattacatcattttaaGACACTATCTCTaaatattacacttttttttttagaaaatatgactatttaaatatttctttttgattaaaaaaatctgaaatatatttgtattttattcttgAAATGTCTTGATGACTttgttcttgaaatattttttatactttaagtttagtatgtaattattaatttagtaatGGCCCTAAAATGCCACATTTAAATTGGTCTTTCACATTTCCACAcacatcttgtttttttaagaagttttttttaggcACCATTATTTCTAAGAGTGCACACATAAATAACACATGCTTATTTAATAATATCAGTAATCTGAGTATTTCTACATACCTTCTCGGGACTGCcataataataagaattataatatataacgtTGTATGAGAttacctctgtgtgtgtgtttaatcttAAAGTGTCCTTTAGCcaatatttcttttcttttcctataAGAAAAACCATGTAGCTGGTTTCTTTCTGTATGCTGATTTTGCTGATCTCAATCACTTGACTGATTCAACGATTGTAGCCAAATATTAatcactgctttttaaaaaccGGTGTTTAAATCTGATGATAATCTGTCCACtgtgtttatataatatatattagattGATTTTTATAATGGTGTTTGTTCCACCCtaaaagttttataaatatataaatataaagtgagattttttttgcacaatatgATAATGCACAAATACTTTTGTATCATGAATGTGTGTGATACAGTATAATCTATTGTCCATGTAGAAAGATGAGTTAAATTTGACTCTTGGGAACTAATATTTGACCCTGATTAACTTTCAAGATACTGTAACTCTTTTCTACGCATTTCTATTTGATCAGTGTAACTTGATGCTGTTAATAATAGACATTTAATTTGCACATTTGCCTGCATGTCTATTTTCCTACATTCATGcaatgtaataaaacatttcGTGTAGAGATACACACCCCATTCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05675 ABCD1, ALD; ATP-binding cassette, subfamily D (ALD), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82004 lncRNA downstream 43896 52258127 ~ 52266433 (-) True G60798
TU81975 lncRNA downstream 117503 52125475 ~ 52192826 (-) True G60781
TU81976 lncRNA downstream 182182 52126117 ~ 52128147 (-) True G60782
TU81974 lncRNA downstream 187271 52120823 ~ 52123058 (-) True G60780
TU81955 lncRNA downstream 210101 52039791 ~ 52100228 (-) True G60768
TU82011 lncRNA upstream 85623 52418708 ~ 52419003 (-) True G60805
TU82013 lncRNA upstream 90857 52423942 ~ 52478278 (-) True G60806
TU82017 lncRNA upstream 126940 52460025 ~ 52511578 (-) True G60809
TU81991 lncRNA upstream 151344 52484429 ~ 52493904 (-) True LOC103028851
XM_022670889.1 mRNA downstream 2526 52158562 ~ 52307803 (-) False plxnb3
XM_022670890.1 mRNA downstream 53141 52158562 ~ 52257188 (-) True plxnb3
XM_007245817.3 mRNA downstream 157177 52131931 ~ 52153152 (-) False LOC103025375
XM_022670887.1 mRNA downstream 157383 52131931 ~ 52152946 (-) True LOC103025375
XM_022670882.1 mRNA downstream 247129 52049626 ~ 52063200 (-) True LOC103025058
XM_007245825.3 mRNA upstream 13293 52346378 ~ 52423002 (-) False LOC103027481
XM_022670891.1 mRNA upstream 13293 52346378 ~ 52386836 (-) True LOC103027481
XM_007245826.2 mRNA upstream 100575 52433660 ~ 52454309 (-) True LOC103027804
XM_022670893.1 mRNA upstream 100575 52433660 ~ 52453887 (-) False LOC103027804
XM_007245828.3 mRNA upstream 123411 52456496 ~ 52466298 (-) False LOC103028330
TU81746 other downstream 602217 51706338 ~ 51708112 (-) True G60627
TU81451 other downstream 1478129 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 3005077 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 3226396 49062621 ~ 49083933 (-) False LOC103030200
TU80461 other downstream 4390948 47843007 ~ 47919381 (-) False selenok

Expression Profile