LOC103027804


Basic Information

Item Value
gene id LOC103027804
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 52433660 ~ 52454309 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245826.2
ATGATTGCACTCGTTTATGCAAATCAAAAAAGTGAACTAACAAATGCATTTAGCTGTTTTGCATTGTCCATGTACTCATTTGCTCAATGCAACGATAGTATCGTATTCGCTACGCTTTTCTAGCGTGCATTTCTAACTATTCAACTTCCTCCGACgttctgcacatgctcagtagCGCGCGGAAAGTATCGCTAATCGTAGGCTCGAGCGACGCGAGAGGCAGCAGAAAGGCAGGAACGGCTGCACGAGGCGCTGCGTGCTGTTTGGAGGGCTGCCTGAAATGAGACCATCCTCCGCGTTTCTCATGGACTGAGCTCTGCAGTGGGTGAAAGGATGTGAATCTCTCCCTTGTTCACTGTTCCTGGGATGTGTCCAGCTCCACGGGCGTGTGAGGGAGACGCTGATGGATGAAATGATGGAGGAGTCGAGGGAACAGTCGGGGGGGagtggagaggaggaggagacagAGCCGGGTTTGTTGACTGAAATAGTCCAGGTCGGCGTGGACGCTGAATCAGGTGGAGATGGGGAGATAGCACCTGCTGATTGGCTGGAACCACTGGATGAGGAATGTGGCGAGGCTGGGAAAGAAGGTGTGCAGAATGGCAGCAGCGAGCAACAAGGCGGCAGAAGGAAAAGAGGAGGATGGCGGAAAAGAAAAGGAGGAAGGCGGAAGGTCCTTTTGACTGATGATTGGATAGACTGTTCTGAACTGGGCAAAGgctggaagaaaaaaatcattcatCTGCGCAGCACTTCTGACATACCCAAACAAACCATGAACTACATGAGTCCAAACGGCTTCCGCATCAGGAGTAAAATAAACCTTAAGAAACGTGTGAAGGTCGACGTGACTAACTTTGACTTCCATAAAGGAATATTTGTGGATGATCTTGTCAAACCAAAGCGACAGCGGTCCAGATCCTTACATTCGTCGTTTTCTTTCTCCACTGATGCCCTCCAAACCCAAGACAGTATCACCGAGACCCCTCAGAAACCACGCCTCACCCGCAAATCTCTTGCAGCAAGTGCAGCCGCACCTTTACCATTAAATGAGCTTTCTAGCAGCCCATTAAAGCTAAGCCATGTATCCCCTACCACACAGCAAGCACCACAACCCAGCCTTTCACCCTCTCTACGACTGGGTGACTTCTCAACCCAAATAGAGAACGATTTTATCActcctgaaaaaaacaaaactgcattaCTGTCCCGTTCCTGGCTCCAGTCCCCCCTGGCCCCTGTCAGCCCAGCTGAAACTCCATCTGAGAAAGACCCGCCCACATTCCTGAGTGCACTTAAAAGCTCCCCAGACATCCTTCGGCCATCGGACGCCAGTGCAGCGATCAATGGAGAGAAGCAGGAGAATGGTTTCTCTTACAAGATCTGTGTAAGCTGCGGATCTCAGTACCTTAATTCAGATTGTAAAGATGACGGCTTGTGTATCCTGTGCTCAGTAAAGCCAAGGCAGCGGCCTCCTCCTCACATTATCTTTAAAAAGGTGGGACAAGATAAGTGGATAGTTGGGAAAAGAAAATCTGAAGGCTTCATGaaaaAGAAGATTACTAAGCTAGGGAAGAAAAGTAAATCTAGATCAGTGCAATTGTTGGccagaaaggaaaagaaaaaagaaaatccggAAATCAAAACGCTggacagtgaggaggatgattaTGTGcttgatgatggtgttgatgatgaCGATGACCCAGAATTTGGGCCAAAGAAAAGGAAACGGCGGATGTGTGGCCAGTGTAACGCCTGCCTGCGGAACCAGGACTGCGGCAAATGTGATTTCTGCAAGGACAAACCCAAATTTGGCGGCCATAACAAGAAAAGACAGAAGTGCCGCCTTCGCCAGTGCAAGTTTCGATCTCGCCTGAAGACGTGGAAAATCAGACAAGACCAGAGCACTGGATTGGTCGACGAGGCCGAAGATGATCAGGAGGACGAGCTGGAGGATGAAAAGCACAGCAGATCTCAGAGGAAGCGGGATCACCAGTGGAAGGATGTGTTTACAGACAGTGAAGCTGAAGATAATGAGGATGAAGAGCACCACCCTGGCAAAAAAGGGCGAGAGGGCAGGAGACGAAAAGGGAAGTACAGCTATAAACTAGAGGAAGAAGATGAGGAGGATGATCGGACGGGGGGAGCAGATGTCAAGAAGGATGGATTGAACTGTCTGGAAGAGACCCAGTTTGTGGTTGGTGATGATGGGGATATTGTATTTTACGAGGAAATCAACgcaaacagacacacacccgGTGCTCAGAATGGCAGTATGGAGATTGTGGAGAGCAGCGACGGCCAGCCTGCACTGGTGATGTCTAGCCAGCCTTCTCAGGACTGGGTCTGCACTGTAGCAGGCTTGCCTGAGGGATCTCAGGTGCTGGGCTCTGTTAACCTGAGCAGCAATGGCCCTGTGCAGCTGAGCGACGTCTGCCCTTCTTCCTCTGCACCAATCTCAAACATCCTTACCAGTAACCCGCACCTCAGTGAGATTATAAACACCAACTGGATCAATCTTAACTGGGCAGAAACAGCCATGCCACAGGTCATCCAACAACCAGAGCCCACGCCAGAACCTGCAAAAACCCCTCCTTTGGTATTACAGACCCACAGTTTGTTAGACGATGACCCAGTAGAGGACCCGgggctgctggagctgctgacCTCCCTGCGCCGCACCGTGCTGCCGGCTCACTGGGTGGGCGTGATGGCTAAGGGACCGCTCCTGCAGGTGTTCCAGTGTTCGAAGCTCTCGCCCATGGCTGACACTGTCCTGCAGATCGAGAAAGACTTCTACTTCCAGATCAACGTCCAGAACCAGCCGCTGCTCCTCACGCACCCGGTCTACGAGCGCCACCCACCACGCCTCCCCTCGGCCAGCCTGGTGGTGGCGCTGCTGCTGGACCTGGAGGAGATGAACGTGTGTCAGGGGTACCAGAGCTTTGAGGAGGGGCCGAATCAAACCCCACTGCTGTGCGCCCGTGCCGCGCTGTGCCAGCTGATTATCCCGCAGGACGAAGAGTGCTGTGAGAGGTGCCTGCTGCCCATCAATATCTAGAGGGTCAGCAGGCAACCTGGAAATGATGCCTCTAACCCCGGAAGCTTCCCAGAGGTGCTCAGAGCAGACTGCACCAGTCCAACTGAATTACAGAATCTTTAAAAATTCCAGTATGAGCTATGCCAAAACTCTAGGTAGCAAAACTTCTTTAAGTGTAGTGATAAATCGAAAGTTCTCCCAAGCAGTGTTGGCTCCAGAGGGATAATAGATGATATTCATCGTGCTGTAGCCGAGCTTGCAGCCCTGCAAGTAGTTCCCCGGTGTGATACTAAATTCATCCAGGACCTTCCCAGACATTTgagatttttattataatttgttttatttatgattaaaaaataagaaggTGCAATAGGCCTTTCATACCTGTCACTTTGTACAGTGTTGCTCTTTCAGTTCTTTAGCCTTGAGCTGCTTCCGTTCATAATATGGTGCTTTCTGCATGCCTGGTTGGCGGAACACTCTCTGTAGCAAAGCATGTCCTTCCAGGCTCTGCGAATCTCCATCAAGGCCAGTCCTGTGGCCTTCAAGGGAACAAACAGTAGTAAATTCTTGGCCACCGTCCAGCCAGCT
>XM_022670893.1
AACGTAAATAACGAAAAAAACCCGATCGGCTGTTTGGCTGTTTTTCCCAGCGGCGGCGGCAGCGTGGAGCGACCACAGCCGGTTTACGGGCGAGCTTGCCCATTTACAGCGCCCCGCTTATAACAGAACACGACTGAAcctctagagggagcccgcgaCTGCCTGAAATGAGACCATCCTCCGCGTTTCTCATGGACTGAGCTCTGCAGTGGGTGAAAGGATGTGAATCTCTCCCTTGTTCACTGTTCCTGGGATGTGTCCAGCTCCACGGGCGTGTGAGGGAGACGCTGATGGATGAAATGATGGAGGAGTCGAGGGAACAGTCGGGGGGGagtggagaggaggaggagacagAGCCGGGTTTGTTGACTGAAATAGTCCAGGTCGGCGTGGACGCTGAATCAGGTGGAGATGGGGAGATAGCACCTGCTGATTGGCTGGAACCACTGGATGAGGAATGTGGCGAGGCTGGGAAAGAAGGTGTGCAGAATGGCAGCAGCGAGCAACAAGGCGGCAGAAGGAAAAGAGGAGGATGGCGGAAAAGAAAAGGAGGAAGGCGGAAGGTCCTTTTGACTGATGATTGGATAGACTGTTCTGAACTGGGCAAAGgctggaagaaaaaaatcattcatCTGCGCAGCACTTCTGACATACCCAAACAAACCATGAACTACATGAGTCCAAACGGCTTCCGCATCAGGAGTAAAATAAACCTTAAGAAACGTGTGAAGGTCGACGTGACTAACTTTGACTTCCATAAAGGAATATTTGTGGATGATCTTGTCAAACCAAAGCGACAGCGGTCCAGATCCTTACATTCGTCGTTTTCTTTCTCCACTGATGCCCTCCAAACCCAAGACAGTATCACCGAGACCCCTCAGAAACCACGCCTCACCCGCAAATCTCTTGCAGCAAGTGCAGCCGCACCTTTACCATTAAATGAGCTTTCTAGCAGCCCATTAAAGCTAAGCCATGTATCCCCTACCACACAGCAAGCACCACAACCCAGCCTTTCACCCTCTCTACGACTGGGTGACTTCTCAACCCAAATAGAGAACGATTTTATCActcctgaaaaaaacaaaactgcattaCTGTCCCGTTCCTGGCTCCAGTCCCCCCTGGCCCCTGTCAGCCCAGCTGAAACTCCATCTGAGAAAGACCCGCCCACATTCCTGAGTGCACTTAAAAGCTCCCCAGACATCCTTCGGCCATCGGACGCCAGTGCAGCGATCAATGGAGAGAAGCAGGAGAATGGTTTCTCTTACAAGATCTGTGTAAGCTGCGGATCTCAGTACCTTAATTCAGATTGTAAAGATGACGGCTTGTGTATCCTGTGCTCAGTAAAGCCAAGGCAGCGGCCTCCTCCTCACATTATCTTTAAAAAGGTGGGACAAGATAAGTGGATAGTTGGGAAAAGAAAATCTGAAGGCTTCATGaaaaAGAAGATTACTAAGCTAGGGAAGAAAAGTAAATCTAGATCAGTGCAATTGTTGGccagaaaggaaaagaaaaaagaaaatccggAAATCAAAACGCTggacagtgaggaggatgattaTGTGcttgatgatggtgttgatgatgaCGATGACCCAGAATTTGGGCCAAAGAAAAGGAAACGGCGGATGTGTGGCCAGTGTAACGCCTGCCTGCGGAACCAGGACTGCGGCAAATGTGATTTCTGCAAGGACAAACCCAAATTTGGCGGCCATAACAAGAAAAGACAGAAGTGCCGCCTTCGCCAGTGCAAGTTTCGATCTCGCCTGAAGACGTGGAAAATCAGACAAGACCAGAGCACTGGATTGGTCGACGAGGCCGAAGATGATCAGGAGGACGAGCTGGAGGATGAAAAGCACAGCAGATCTCAGAGGAAGCGGGATCACCAGTGGAAGGATGTGTTTACAGACAGTGAAGCTGAAGATAATGAGGATGAAGAGCACCACCCTGGCAAAAAAGGGCGAGAGGGCAGGAGACGAAAAGGGAAGTACAGCTATAAACTAGAGGAAGAAGATGAGGAGGATGATCGGACGGGGGGAGCAGATGTCAAGAAGGATGGATTGAACTGTCTGGAAGAGACCCAGTTTGTGGTTGGTGATGATGGGGATATTGTATTTTACGAGGAAATCAACgcaaacagacacacacccgGTGCTCAGAATGGCAGTATGGAGATTGTGGAGAGCAGCGACGGCCAGCCTGCACTGGTGATGTCTAGCCAGCCTTCTCAGGACTGGGTCTGCACTGTAGCAGGCTTGCCTGAGGGATCTCAGGTGCTGGGCTCTGTTAACCTGAGCAGCAATGGCCCTGTGCAGCTGAGCGACGTCTGCCCTTCTTCCTCTGCACCAATCTCAAACATCCTTACCAGTAACCCGCACCTCAGTGAGATTATAAACACCAACTGGATCAATCTTAACTGGGCAGAAACAGCCATGCCACAGGTCATCCAACAACCAGAGCCCACGCCAGAACCTGCAAAAACCCCTCCTTTGGTATTACAGACCCACAGTTTGTTAGACGATGACCCAGTAGAGGACCCGgggctgctggagctgctgacCTCCCTGCGCCGCACCGTGCTGCCGGCTCACTGGGTGGGCGTGATGGCTAAGGGACCGCTCCTGCAGGTGTTCCAGTGTTCGAAGCTCTCGCCCATGGCTGACACTGTCCTGCAGATCGAGAAAGACTTCTACTTCCAGATCAACGTCCAGAACCAGCCGCTGCTCCTCACGCACCCGGTCTACGAGCGCCACCCACCACGCCTCCCCTCGGCCAGCCTGGTGGTGGCGCTGCTGCTGGACCTGGAGGAGATGAACGTGTGTCAGGGGTACCAGAGCTTTGAGGAGGGGCCGAATCAAACCCCACTGCTGTGCGCCCGTGCCGCGCTGTGCCAGCTGATTATCCCGCAGGACGAAGAGTGCTGTGAGAGGTGCCTGCTGCCCATCAATATCTAGAGGGTCAGCAGGCAACCTGGAAATGATGCCTCTAACCCCGGAAGCTTCCCAGAGGTGCTCAGAGCAGACTGCACCAGTCCAACTGAATTACAGAATCTTTAAAAATTCCAGTATGAGCTATGCCAAAACTCTAGGTAGCAAAACTTCTTTAAGTGTAGTGATAAATCGAAAGTTCTCCCAAGCAGTGTTGGCTCCAGAGGGATAATAGATGATATTCATCGTGCTGTAGCCGAGCTTGCAGCCCTGCAAGTAGTTCCCCGGTGTGATACTAAATTCATCCAGGACCTTCCCAGACATTTgagatttttattataatttgttttatttatgattaaaaaataagaaggTGCAATAGGCCTTTCATACCTGTCACTTTGTACAGTGTTGCTCTTTCAGTTCTTTAGCCTTGAGCTGCTTCCGTTCATAATATGGTGCTTTCTGCATGCCTGGTTGGCGGAACACTCTCTGTAGCAAAGCATGTCCTTCCAGGCTCTGCGAATCTCCATCAAGGCCAGTCCTGTGGCCTTCAAGGGAACAAACAGTAGTAAATTCTTGGCCACCGTCCAGCCAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245826.2 True 3640 mRNA 0.50 17 52433660 52454309
XM_022670893.1 False 3527 mRNA 0.51 17 52433660 52453887

Neighbor

gene id symbol gene type direction distance location
LOC103027481 LOC103027481,LOC108440541 coding downstream 10658 52346378 ~ 52423002 (-)
LOC103026406 abcd1,LOC108265308,LOC108440542,LOC107674359,LOC107701814,LOC107727428,LOC107552221,LOC107743108 coding downstream 100575 52310329 ~ 52333085 (-)
plxnb3 plxnb3,LOC108265307,LOC107727420,LOC107674349,LOC107701812,LOC107584917 coding downstream 125857 52158562 ~ 52307803 (-)
LOC103025375 srpk3,LOC107743111,LOC107601770,LOC107727421 coding downstream 280508 52131931 ~ 52153152 (-)
LOC103025058 LOC108440549 coding downstream 370460 52049626 ~ 52063200 (-)
LOC103028330 cxxc1,cxxc1a,LOC108440538,LOC107727409,LOC108265945,LOC107674299 coding upstream 2187 52456496 ~ 52466298 (-)
G60805 NA non-coding downstream 14657 52418708 ~ 52419003 (-)
G60798 NA non-coding downstream 167227 52258127 ~ 52266433 (-)
G60781 NA non-coding downstream 240834 52125475 ~ 52192826 (-)
G60782 tsr2,LOC107743119,LOC107727422 non-coding downstream 305513 52126117 ~ 52128147 (-)
G60780 NA non-coding downstream 310602 52120823 ~ 52123058 (-)
G60809 NA non-coding upstream 5716 52460025 ~ 52511578 (-)
G60627 NA other downstream 725548 51706338 ~ 51708112 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other downstream 853026 51539498 ~ 51580634 (-)
LOC103032656 LOC108413501 other downstream 925080 51416220 ~ 51508580 (-)
G60441 NA other downstream 1601460 50827695 ~ 50832200 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other downstream 1803496 50565289 ~ 50630164 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 30120 52484429 ~ 52524184 (-)

Expression


Co-expression Network