RNA id: TU82013


Basic Information

Item Value
RNA id TU82013
length 354
lncRNA type read_through
GC content 0.33
exon number 2
gene id G60806
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 52423942 ~ 52478278 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACCAAAAcatctttacttattttaatgcacaataaaaaaaatacagttcacAGTAAATCATAagttaatacataatacataagtTAAAGCAGTCCTCAGACAGATCGTGTGTAGTGTGCTGATATCCATTACACATCATAGTAAGCAGATCATATGCAGGTCAGTTATctgataataaaacaaacagcaagTGCAGTTTATCTTAGAGTATGGACATCTCTTCTGTcgacaatgaaaaaaaatgatgcattgACTGTATTTATGACCCATTTAAATGTGCATATTCACCAATCAGGCATAACAATAAAACCACCTGCCCAATATTATGCAGAACCAAAATTAGTTCTGACCCg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82011 lncRNA downstream 4939 52418708 ~ 52419003 (-) True G60805
TU82004 lncRNA downstream 157509 52258127 ~ 52266433 (-) True G60798
TU81975 lncRNA downstream 231116 52125475 ~ 52192826 (-) True G60781
TU81976 lncRNA downstream 295795 52126117 ~ 52128147 (-) True G60782
TU81974 lncRNA downstream 300884 52120823 ~ 52123058 (-) True G60780
TU81991 lncRNA upstream 6151 52484429 ~ 52493904 (-) True LOC103028851
XM_007245825.3 mRNA downstream 940 52346378 ~ 52423002 (-) False LOC103027481
XM_022670891.1 mRNA downstream 37106 52346378 ~ 52386836 (-) True LOC103027481
XM_007245821.3 mRNA downstream 90857 52310329 ~ 52333085 (-) True LOC103026406
XM_022670889.1 mRNA downstream 116139 52158562 ~ 52307803 (-) False plxnb3
XM_022670890.1 mRNA downstream 166754 52158562 ~ 52257188 (-) True plxnb3
XM_007245831.3 mRNA upstream 11377 52489655 ~ 52524184 (-) False LOC103028851
XM_007245829.3 mRNA upstream 11377 52489655 ~ 52524184 (-) False LOC103028851
XM_007245830.3 mRNA upstream 11377 52489655 ~ 52524183 (-) False LOC103028851
XM_015604929.2 mRNA upstream 11377 52489655 ~ 52524183 (-) False LOC103028851
XM_022670894.1 mRNA upstream 11377 52489655 ~ 52515973 (-) False LOC103028851
TU81746 other downstream 715830 51706338 ~ 51708112 (-) True G60627
TU81451 other downstream 1591742 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 3118690 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 3340009 49062621 ~ 49083933 (-) False LOC103030200
TU80461 other downstream 4504561 47843007 ~ 47919381 (-) False selenok

Expression Profile