RNA id: XM_007245829.3


Basic Information

Item Value
RNA id XM_007245829.3
length 4297
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC103028851
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 52484429 ~ 52524184 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACCTCAGGCTGGAGCTGAGTAACGGGTGCAGGGCACGAGCTGTTCGGACGGACTGCGGGGGCTTTAGTGCGCTAGTTTATCGGTGTTTTAGCGGGTAAATAGAGCGAAATCGGCTGTCAGTGCGAGATAAACTACTTACACAGACTGTAGGCGCGTGTTTTAGCTTGTAGATGCATCGCTGATGACAGATATCGACctgttatttctctttttttaattgtcttgTTTTACCGGGGCGTGATTCATACAAACAATCTGTTTACTCAGTTTTAGCTACGTACTACTAACAgactaaaaacaattaaaactctCTGTTTAAGCGCTTTTATTTAGTTAGACAGTTATAAAAGGCTGTATAACTCGCGTGTATATTGAGTAAGGTCAGTATCAGTGTGCAGGGAGAGTTTTATATGAGCTGTATTGGGATTATTTTTGTAGTTAGTGTTCTGgaggcagcagcagtagtagtattagtagtaagaGGAGGCTCCGCTGTGTTTAGAGATGTCTAGCCTGTCTGTGGCAGCAGGGCAGGAGCAGGGGGAAGGACAGGGGTATCTCCAGGCTCCAGCAGCGCAGAAGAGCATCAGTCAGGTCGTGGTTCCCGGGCAGCAGCAGCCCCAGACCGTGTTCGTGATTTTGGATTCCTCCGCTGAGTCTCTGAATCTCATCAGTGTGGAGCCGCTTTTACCTGAGTCTGGAATCGTGGCAGATATCGAGGTGGACGGCATCCTTGCGTCTGATTCGGACACGTTTTACCAGCTGAAGAGTCAGCCCATCGCTCTCAGCGGCTCCGTGACCCCTGCTGACCCCGTGGTGACCCCGGGTGCCTCAGCGATGACGTCGCGAGTGTTGATGAGGCAGGAGCTGATGAGGCAGCAGGCCCAGGACCAGGAGAGAAGAGAAGCCCAGCAGCAAGCATCCAGCGCTCAGCTACGTTCCACCGATGCCTCGCCCGCCATAGCTGTGTCCTCCTCGCTGCCCTCGGCCCGGCCCACGCCCACACAGGTCCCCATGGAGGTGCTGAAGGTTCAGACTCACCTGGAGAACCCGACTAAGTACCACATCCAGCAGGCCCAGAGGCAGCAGGTCAAACAGTACCTCTCCCACACCCTGGGCAACAAGGTAGCCAGTCAGACGCTGGCCACATCTCCTTCGCCACAGTCAGGCTCCGCCCCCGAACTGGCTCCCGCCGCCAGCAGCACTCCCAGCAGCCCCCTGGCCGTGCTCAGCCTGAGCTCCAACAAAGAGGAGATCGAGGACGTCATCGATGACATCATCAGCCTTGAATCCAGCCTGAACGATGAGTTTATGACGCTGATCGACTCTGGCCTGCAGCTTCCCAACACGctgcCGGTCTCAGGAAACATCCTGGATGTGTACAGCAGTGCCGGGATGGCCACACCCACCATCACCGTCAGCAACTCCTGTCCTGCAGACCTGCACAACGTCAAGAGAGAGCTGTCAGGTGCTTCAGCAGATTATGCTGAGGCCAAAGCTCTCATTAAGGAACGGCAGAAAAAGGACAACCACAACCTCATCGAAAGGCGGAGAAGATTCAACATCAACGACCGTATTAAAGAACTGGGAGCGCTAGTCCCCAAGTCAAGCGACCCTGAGATGCGCTGGAACAAGGGCACCATCCTGAAGGCGTCGGTGGACTACATCCGTAAACTGCAGAAGGAGCAGCACAGGGCTAAAGAGATGGAGCTGAGGCAGAAGAAGCTCGAGCACGCCAACCGCACACTCCTGCTTCGCATACAGGAGTTGGAGATGCAGGCTCGTGTGCACGGCATCGCCTCCACCCAGGGTTCAGACTCCaccctcctccagcagcagcagcagcagcagcatcagacCACCATTCTGGATTCCAGCAACGAACCCCACAGTAAAACCCTCCTGACGCTGTGCGGCCCGGGGCTCAACCAAACCACCATCTCCACTCTACTCTCCCCTCCCCCCTCCGCCTCTCCAGTGGGCGGAGCCATGACCGTCCCCCTGGACCTCGGAACTCTCAGCTTCGGCGAGCTGGACGACCCCACCTCCTCCATGTTTACATCCACCCTAATGGGGGAGATGGACCTGGGGGATATTTTGATGGACGATGCGGGCGCACTGTCTCCAGTGGGGGGCGGCGACCCCCTGCTTTCCTCGGTCTCCCCCGGAGCCTCCAAGACCAGCAGCCGCAGAAGCAGTTTCAGCATGGATGAGGATTTGTGACGGACGTGATTTGAACGTGATTTGAACGTGATTTTAGGCGGTCGGCGGTCTGAAGTTGAGTTTTGATCTgcgggacttttattatgaaagcACAGAGCCGCGTCTCTGTCTTTGCTCGTGCTCCTGCCTcgtaaagtggccagtagagGCCAGTGTTTCACAAGGTCaattgtttttaatcatagtactGTAAAAGATTCACACGCAGTGTGGCTATGATTCACTGCTGAGATGCTTCAACCTTACGTTTACCTCAACCAGTGTGAGGTACTGGGGATTAGAAGAGTGTGCAGAAGCCGAGTGGCAAACTGATGCAGGTAGATTAGGATTTGTCTCTTTTGTTGTACTGATATAGAGAAGCTACAAACTGCAAAATGAAATACCTTGGGAAGTGAAATCATCTGTAATCCAGTCAAAATATTTCCAGtcagtattttgagattacttgttttagagcttatttttataccatttaaagacactttttaaataattatatgttGTTTTCTGGTTTTAAGCATTGtatccaaaagaaaaaaagctaaacTATGTTGTCTTAAACTATGTGAAATTTGTCTAAAAGTTAAAAGtccacattaaatatataaaatagtcaTGTaataatatgcaaaaaaaagccCAGCAGGAACTGGATCTCACGTACATGTCAGAAAGagattatttgtatttttttttttgtttaaatgttagtaaaatttaaattttggTTGGAAATAACCAACAAGTCAAATATCCAgcgaaaaaaacaacaacaatgggTTAACATCAAGCTCCAAGGTTAAACAGATTTAACAGCATGAGTCAAGAACAACAGCTTACATACAATGTGTGTAACAATGTTAAAGAAATTCACTCTGTGAGGATGCTAAAATTAAACTAATAGAATTCACCTGGTGTCACGACGAGCTGGGATAAGAAAACGTTCAGATTTCAGATGGTTTCACttgttgtttgtgttgtgttgttctgAGCTCACTGATCCTgaattctccatcaaacacatactaaactattacactattatacaAGCTGACAGATTGATGGATTGACATCAATCCTAATAAGAACTGACTTTATAAAGCAGACAAAAACAGGTCTGGCTATATAGGGGTGTGCTGAGATCTACTGACTTTAACAAGGATTCAGTCATAGGTTGCCAGGCCTGTATGGAACTCTCAGAGGGGTTGAATACAGTTAAATACAGAACTCTCACTGGGGGATTGTGACGATACATTTAAGATCTGAAGAGACTCATATAAGATCATACAGGAGAGATACAAGAGTTGTTGGGTTTATGGTAAAACTGGCTGCACTGCTATCCTACTGTTATGTATTTTTCTGCATATGATtaatacataacatacatacatacattgaTTGACATCTATTACAAGATGAGTACTTACGAAAAAAATGAATTTCGTTAGTTTCAGACAAATAACATTTTCAATCATATATTTTAacttatatatgaaaaatatatatatattgttaaagtCTCGTGAACCCGATAGCATGACTTGTCTCGTCTTGTGAGAtgagtgtctcgtcacacccctatttctGACAGATCAGTGTTTTTTAGGGCCGATATTAATCATCACCAATCATTTTCTGCTTGATCAGCTGATCACCAACATCAACCAAGGGCTGAATTCAATGTTACCCTTTCCAGGCAAACCTGGTTATGATTGTGCATCATCGTGCAATGCTTCTGCACTGTCATTTAAGACTCTGTTAAACTCCTCCCACCAGGTGTGAGAGCTCTGAGTGAATTCTGGGAGAGATCTGTACTGTGGAGGTAGCTCAGCTGTGTTTTATGTTGGGTCAGTGAGGCAGTGAGGCTCGAACAGGGTGTGCTTCTACCTTTAGATCATTGCTCAGTATATATCATGTagctcataatttttaaagggATAGTAGCGATCTGCTCTTCTGTTGCTGTATGAATTCAGCCATCATTTacggtgtgtgtgagtgtatgtacttatgtatgtatgtgtgtatatttcgACATTTTGTATGAATAGAAAGgctgtatgtttgtgtaaa

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82013 lncRNA downstream 11377 52423942 ~ 52478278 (-) True G60806
TU82011 lncRNA downstream 70652 52418708 ~ 52419003 (-) True G60805
TU82004 lncRNA downstream 223222 52258127 ~ 52266433 (-) True G60798
TU81975 lncRNA downstream 296829 52125475 ~ 52192826 (-) True G60781
XM_007245828.3 mRNA downstream 23357 52456496 ~ 52466298 (-) False LOC103028330
XM_007245827.3 mRNA downstream 23357 52456496 ~ 52466298 (-) True LOC103028330
XM_007245826.2 mRNA downstream 35346 52433660 ~ 52454309 (-) True LOC103027804
XM_022670893.1 mRNA downstream 35768 52433660 ~ 52453887 (-) False LOC103027804
XM_022670891.1 mRNA downstream 102819 52346378 ~ 52386836 (-) True LOC103027481
TU81746 other downstream 781543 51706338 ~ 51708112 (-) True G60627
TU81451 other downstream 1657455 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 3184403 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 3405722 49062621 ~ 49083933 (-) False LOC103030200
TU80461 other downstream 4570274 47843007 ~ 47919381 (-) False selenok

Expression Profile