CI01000016_02406070_02411794 (PRUNE)


Basic Information

Item Value
gene id CI01000016_02406070_02411794
gene name PRUNE
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2406070 ~ 2412306 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_02406070_02411794.mRNA
GCTTGTAGTAAGAACAGCCCAGGGCTGCATGTCGTAATGGGAAATGAGGCTTGTGATGTGGACTCCATGGTATCAGCCCTGACCTTCGCCTACTTTCTTTCAAAGAGTCTTGATTGTAAGAGGGTGCCGGTGCCTGTACTCAACATCCCACGAGCTGAGTTTCCCTTGCGCTCTGACAGCAGCTTTCTGTTGAGAGAAACCGGTTTGTCGCAGGACTACCTGCTTTTCAGGGATGAGGTGGACCTCCACAGCCTGCACAAGAACAAACAGCTGACCTTGACCCTGGTTGACCACAACGTTCTGCCCAGTGCTGACAGTGAGCTGGAGGATGCAGTTGTAGAAGTGATTGACCACCACCTCCTACAGAGGCCCTCATCTCCCTCCTGCCCTGTCACTGTGGAGACCGTGGGCTCCTGTGCCACCTTGGTGACAGAGCTCATTGCCCAAAAAGCGCCTGAGGTGCTCGACCAACAAGTGGCTCAGCTTTTATACGGTACCATTATCCTAGACTGTGTTAACATGGCACCTGAGGCAGGTAAAGTCACCCCTAAGGACAGCCAGTACGCCATCTTTTTGGAGAAACGTTTTCCAAAGCTGCCTCCGAGGGGCGCTCTGTTTCAGTCGTTACAGAATGCCAAGTTTGACGTGTCAGGCCTCTCCACAGAGCAGATGCTGTTGAAAGACATGAAAGCTGCATCTGCTGGGGATCTGAACTTGGCTGTCAGTGTCATTTACATGACACTAGAGGCTTTTCTTCAGAGGCGTGGCTTACAGCAGGACCTCTGTGAATTCTGCCACAATCACAGCTACAACCTGCTGATCGCAATGACAATCTCTTTCAACGACAACAAGGAGCCCTTCCGACAGCTAGCCGTCTACAGTTCCAGCACTGTCTACAGGGAAGAGATGAGTAAAGCACTAGAAAACGCCAAAACCCCTAGTCTGGACCTTAAACCAATGAGCAGTCCATATCTGGATGTCAAGGCCTATTTACAGGGAAACACACTGGCATCCCGCAAGAAGGTAATGCCCATAATCACAGACTTCCTGAAGGAGAGGGAAAGGAAAGTGGCTCAAAGTGGAAACATAGAGGACCTATATCTGGACGATGATTCTAATCAGTACCAGAGTGACTCTCAGCAATGTACTGAAGACGCTGGGATTGAGGACGATACTCCATTTCCTCCAACGCCAATGAACAGTCTGGTTGAGGGTTGTCCCTTGGACAATGGCCTACCAAAAATCAGCCCTGAGGTTTTGGTAGAGAAAGTTACCAAGATGGCCAGCATGGAGGACACATCTCCTGAGGGACAATGATGAAGATCTGTTGTCTAAGAGAGTCTTGGATAAAAGCTGGAGAAGAAAAGTCCTTCTGCATCTTTAAGAGGATGTGGTGGATATACAACAGTGGTGCATCAGGGCGTGAGAATGTAATGGCACTTTTTTGATCTAGTTAACTCACAAAGGTACAATACGGTCTGAAGTGACTTTTTCTAAGGACTGGTACATGATGATTCAAATGGAGCATTACATAAATGCATCACATATAAGATGTTTAAAGTTTGGGTGTCATAAAAATGACTGTAAAATTTCAGGTTTAGTCCATTTATTTATTGCTCGCAGTAGTATTCATATTTGATCTTCTAAATTATTTCCAGGTAAACATGAGCTTATTCAGTTCCAAAATTGACAATACGCACGCAGTGCAAGCTAGCGACTGACAATTGATAGAATTAACCAATTCTGAATTAATTTCCGTTATTATACAATTATAATGTGGTAGTTATCGTTGCTTTTGGTGCCACTAACATACTGCATTCTTTATAATA

Function

symbol description
prune Predicted to enable exopolyphosphatase activity. Predicted to be involved in polyphosphate catabolic process. Predicted to be active in cytoplasm. Orthologous to human PRUNE1 (prune exopolyphosphatase 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01514 PRUNE, PPX1; exopolyphosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_02406070_02411794.mRNA True 1829 mRNA 0.46 7 2406070 2412306

Neighbor

gene id symbol gene type direction distance location
CI01000016_02385791_02400026 MYO1EB coding upstream 5618 2385791 ~ 2400452 (+)
CI01000016_02374077_02383616 PI4KB coding upstream 21582 2373943 ~ 2384488 (+)
CI01000016_02367430_02368661 PI4KB coding upstream 37383 2367430 ~ 2368687 (+)
CI01000016_02355737_02362570 SELENBP1, SBP1 coding upstream 42824 2355737 ~ 2363246 (+)
CI01000016_02337039_02343109 POGZB coding upstream 62961 2337039 ~ 2343109 (+)
CI01000016_02415346_02420145 BNIPL coding downstream 3040 2415346 ~ 2420145 (+)
CI01000016_02442140_02442481 NA coding downstream 27769 2440075 ~ 2442483 (+)
CI01000016_02448039_02451863 GABPB2B coding downstream 35733 2448039 ~ 2452319 (+)
CI01000016_02454540_02455751 ELP6 coding downstream 42234 2454540 ~ 2455797 (+)
CI01000016_02457241_02465191 ALDH5A1 coding downstream 44935 2457241 ~ 2465795 (+)
G94729 NA non-coding upstream 47962 2357488 ~ 2358108 (+)
G94726 NA non-coding upstream 72478 2330526 ~ 2333592 (+)
G94696 NA non-coding upstream 134936 2199008 ~ 2271134 (+)
CI01000016_02220464_02221013 NA non-coding upstream 181251 2220464 ~ 2221030 (+)
G93779 NA non-coding upstream 300937 2104906 ~ 2105133 (+)
G94848 NA non-coding downstream 90821 2503127 ~ 2503442 (+)
G94850 NA non-coding downstream 96337 2508643 ~ 2508891 (+)
G94874 NA non-coding downstream 132445 2544751 ~ 2545005 (+)
G94898 NA non-coding downstream 279377 2691683 ~ 2692011 (+)
G94901 NA non-coding downstream 321442 2733748 ~ 2734245 (+)
G93406 NA other upstream 1478538 905400 ~ 927532 (+)
G95439 NA other downstream 1449869 3862175 ~ 3862305 (+)
G95648 NA other downstream 1860330 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 2422252 4829592 ~ 4837457 (+)
G95792 NA other downstream 2807574 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 2993563 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location