CI01000016_02480180_02482592


Basic Information

Item Value
gene id CI01000016_02480180_02482592
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2480180 ~ 2482998 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_02480180_02482592.mRNA
CATAATCACTGTCAGTACCAAACCCTTGAACAGAAATTGAATCTGAAAGCTCCAAGCGAACACAAACCTATCTTCCCTATTAAAATGGATGAACCACCTTGTTCACCAGGTCACACCTGCTCAGGAGAGCCCCATGTGGGCTGTAATGACACTGCTCCATGTCTTGTGGACAACAAAGTTGAGGGGAAAACTGGCAAGAAGAATAAAAAGCATAAAAAGAGACAGAGTGCTGCATGCCAAATGAAAGCAGGTGGTGAGTGTACTCAGGTCACTGTTGAAAAGATGTCACCACCCTCACAACACCTGCCTGAGCGCCTCGAAAAAAGGTCTGCAGGATCAAAGCAAGAAAAGAATACTCGCAAAACAAGAAATCAATCTATTTCACCTGTAACTTCTCCTGCAAGCTCCTCTCATCGACAAAAAGCCCAAAGTGCACAGAAAAAAACATCAGCTCGGTCTACATGTGACCAGTCAACTCAGACGGAGTCACCCCAACACCCCCAATCTGTCCAAACGCAGTCAACACAAACCACTTCGTTCCAGGAAGTACACACACCATCAGCAGAATCCAAGTCCACCCAGACAATAAAGTCCAGTTTTCCCTTAAAACAGGCATACTGGGAAAATTCACTCACAGATCAGTCAGCTGATCAGCAGAAAACCCAATCCAGCACCAAAAGCAGCTATCTGACAGTGATATCCTGGAATATAGACGGTCTGGATTCGGATAATGTCTTTAACCGGGTCAAAGGTCTGCTGTCACTCTTAGGAAAGCACCGTGCAGATGTTGTACTGTTACAAGAGCTGATTCCTCCTTTTTTGATGATTTTACAAAACATTATGAATGATTATCAGTTTCTGCAAGCTAGTGATGAGGGCTATTTCACTGGCATTTTGCTCAGAAAGGACAGAGTACAATTCCTCCAGAGCAACATTGTGAAGTACCCAACAACAGAGATGGGCAGGAACCTGCTAATAGCAAATGTGAAGAAGCTTGGGGGGCTGCCAGACGGTATCTCTGATGTGTGGGAGATGCTGGGGAAACCAGAGGAAAGCAGATACACCTGGGACACATCCATCAATGATAACAAAGAAATCCCTGATCCTATACGCCTGCGATTTGATCGAGTTTTCATCAGAACAGCCGCAGACAGTGCCAAGCTACGGCCAGAAAGCATGACCCTGATTGGTCTGGAGAAGCTGAAGTGTGACTATTTCATCAGCGATCACTGGGGCATTCTTTGTACTTTCACATTTGGGGCATCAGAAGAGCAGTGTGTCACTGACTAATATTCTTTTTTATGGCCTGCACATAATTATGTATATCTAAATGGGTCATAAGTTCATGCTTTTATAAACAAATCACTATTGATAAATGAACTCTGAACTAGTGTTTAAATGTTCATTGACAATCATAAACTGCTGGTTGATTAACTTATGCACCAACCATATACCTATAGGGGAGACCAGGGCTAGTTGTCACACTTTTCACTCCAGTGATACAGTGAATATTTCTATATAATCACATACCTTACATCTTGGCTACAAAAAAGCCACCACAAAAAATTTCCACCATTATTACACAGGAAAAAATATAGTTCATTGAACATACACTGATCGTTTGACACAAATCACAATGGAACCTGCCATTAAACAGCCTATTATTGGATTAAGTAAACCATTACATTGTATAACA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_02480180_02482592.mRNA True 1696 mRNA 0.42 5 2480180 2482998

Neighbor

gene id symbol gene type direction distance location
CI01000016_02457241_02465191 ALDH5A1 coding upstream 14385 2457241 ~ 2465795 (+)
CI01000016_02454540_02455751 ELP6 coding upstream 24383 2454540 ~ 2455797 (+)
CI01000016_02448039_02451863 GABPB2B coding upstream 27861 2448039 ~ 2452319 (+)
CI01000016_02442140_02442481 NA coding upstream 37697 2440075 ~ 2442483 (+)
CI01000016_02415346_02420145 BNIPL coding upstream 60035 2415346 ~ 2420145 (+)
CI01000016_02528921_02540450 NA coding downstream 45148 2528146 ~ 2540652 (+)
CI01000016_02559364_02565395 CALB1 coding downstream 76366 2559364 ~ 2566106 (+)
CI01000016_02576551_02588698 PIK3R4 coding downstream 93553 2576551 ~ 2589120 (+)
CI01000016_02662862_02676190 CAPN7, CAN7 coding downstream 178660 2661658 ~ 2676298 (+)
CI01000016_02714495_02719654 NA coding downstream 231414 2714412 ~ 2719746 (+)
G94729 NA non-coding upstream 122072 2357488 ~ 2358108 (+)
G94726 NA non-coding upstream 146588 2330526 ~ 2333592 (+)
G94696 NA non-coding upstream 209046 2199008 ~ 2271134 (+)
CI01000016_02220464_02221013 NA non-coding upstream 255361 2220464 ~ 2221030 (+)
G93779 NA non-coding upstream 375047 2104906 ~ 2105133 (+)
G94848 NA non-coding downstream 20129 2503127 ~ 2503442 (+)
G94850 NA non-coding downstream 25645 2508643 ~ 2508891 (+)
G94874 NA non-coding downstream 61753 2544751 ~ 2545005 (+)
G94898 NA non-coding downstream 208685 2691683 ~ 2692011 (+)
G94901 NA non-coding downstream 250750 2733748 ~ 2734245 (+)
G93406 NA other upstream 1552648 905400 ~ 927532 (+)
G95439 NA other downstream 1379177 3862175 ~ 3862305 (+)
G95648 NA other downstream 1789638 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 2351560 4829592 ~ 4837457 (+)
G95792 NA other downstream 2736882 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 2922871 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010890 tdp2a coding NC_007127.7 CM002900.2 36901549 ~ 36905789 (-)