CI01000016_04019056_04035116


Basic Information

Item Value
gene id CI01000016_04019056_04035116
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4019010 ~ 4035238 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04019056_04035116.mRNA
ATATAAAGAACTGTATAAAGAAAAGAAAGACTGACAGAAACAGAAAATGGCTGATCGGTGTCACATGTATCTGCTGGGATTGATCATTCTCTGTCCACTTCTGACAGGTGAAACAGAAGTGACTCATGTGTTCAGCACTTCTGGTGAAAATGTCCGTCTGCCCTGTGATAATGCTTTTCCTGGCTGCACATCAACTACATGGAACTATAACAGACATTCAGAGGCAGTTGAACTGATTGCTGGAGGGATAAAGAAAAATAACATAGAGAGACGTGAGAGACTGAGTGTGGGGTCTGACTGCTCTCTGAACATCAAGAAAGTCACACAAGAAGATTATGGGCTTTACACCTGCCGACAGTATGTGAATGGACAAAAACAAGGAACTGGTGCACCTGTTTATCTGCATTTTCTTCATGTTACTTCATCATCCTCACAGACTGAGATCAGACCAGGCAGCTCTGTGACTCTCTCCTGTCAGTTGAATTATTATGGAGTCTCTTGTGATACTTTGGTCCGTTCTGAGGGAATTGAGCTGATCTGGGTGAATCAGGCTGGTGATAGTGTGATGACAGACTCCAGATATCAGATATCATTCTCCTCAACACACTGTAACAGCACTCTGACTACAAAACTCCTGAATGAAGATCTCAACAGAGAGTGGAGATGTCAGGTTACTCAGAGAAATCAACTGAAGACCTCAGCCACATATACTGTCAAGTATTCAGCTCCAGTGGATTCAACAACACTGATTCCAGTCAGAAGCTCAAACTCTGAGAAGAAATCAAGCCGAATTACAGCAGCAGATCCAACACAAGTGGATTCAACAACACTGATTCCAGTCGGCAGCTCAAACTCTGAGAAGAAATCAAGCCGAACTACAGCAGCAGCTCCGACACAAGCTCCAGTCGATTCAATAACACTGATTCCAGTCAGCAGCTCAAACTCTGAGAAGAAATCAAGCCGAACTACAGCAGCAGCTCCGACACAAGCATCAACTACAGAGAAAACACAGATTCCAACTACTGCTGGATCATTATTCAGAGATCATCTGTGCGAGAAGAGCTGCATCAACTACAGAGAAAACACAGATTCCAACTACTGCACCAAAGTCTCTAAATCAAGACATTCTGTGTTTTGTTTTTCTGTCTTTATCATTAAGTATTTCTATTACATGAGGCACCATTATTTTTCAGGTAACAGAAGCGGGACTGATGACTCTGTGGAGCAGAAAGATGATGTGACTTATACTGAGGTTGTTAAGTACAGTAAAGACAAAGCCAAAAATAAGAAGGTTCATGGTGATGATAAAGTGACTTACGCTTCCATCAGTGGAGCAACAGCTGGACCTCAGGATGACAGCAGTCAACTTTATGTCACTGTGAACAAGAACCATCACAAATGAGTAAAATAGTCATTTATTATACAAAGACTTTATATTATGATGTATGAATAGAGAAATATATAATTGACTCCTAGGGGTTTCATTTAGTGCCGTTATAATTACTATCTTTCACATGTTAACAA

Function

NR:

description
diverse immunoglobulin domain-containing protein 3.1 transcript variant 2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04019056_04035116.mRNA True 1524 mRNA 0.41 12 4019010 4035238

Neighbor

gene id symbol gene type direction distance location
CI01000016_04008568_04016209 NA coding upstream 2508 4008520 ~ 4016502 (+)
CI01000016_03977127_03981586 NA coding upstream 36442 3977079 ~ 3982568 (+)
CI01000016_03965750_03967383 NA coding upstream 51613 3965498 ~ 3967397 (+)
CI01000016_03951956_03957698 NA coding upstream 61128 3951410 ~ 3957882 (+)
CI01000016_03942653_03949757 NA coding upstream 69090 3942483 ~ 3949920 (+)
CI01000016_04038553_04043435 NA coding downstream 3266 4038504 ~ 4043574 (+)
CI01000016_04054332_04058529 NA coding downstream 18783 4054021 ~ 4058698 (+)
CI01000016_04062946_04083356 CSN7A, COPS7A coding downstream 27465 4062703 ~ 4083560 (+)
CI01000016_04104194_04120918 GNL1, ZNF384 coding downstream 68666 4103904 ~ 4121508 (+)
CI01000016_04156457_04176927 DDR1 coding downstream 121219 4156457 ~ 4177635 (+)
G95626 NA non-coding upstream 17910 4000781 ~ 4001100 (+)
G95623 NA non-coding upstream 24929 3993806 ~ 3994081 (+)
G95622 NA non-coding upstream 25536 3993274 ~ 3993474 (+)
G95621 NA non-coding upstream 25749 3993037 ~ 3993261 (+)
G95500 NA non-coding upstream 29899 3986772 ~ 3989111 (+)
G95445 NA non-coding downstream 42145 4077383 ~ 4181941 (+)
G95649 NA non-coding downstream 336343 4371581 ~ 4371833 (+)
G95650 NA non-coding downstream 337748 4372986 ~ 4373220 (+)
G95659 NA non-coding downstream 382650 4417888 ~ 4418614 (+)
CI01000016_04428669_04441464 DEDD1 non-coding downstream 404320 4428669 ~ 4441464 (+)
G95439 NA other upstream 155153 3862175 ~ 3862305 (+)
G93406 NA other upstream 3091478 905400 ~ 927532 (+)
G95648 NA other downstream 237398 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 799320 4829592 ~ 4837457 (+)
G95792 NA other downstream 1184642 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 1370631 5405791 ~ 5407963 (+)
G96389 NA other downstream 3125403 7160641 ~ 7161290 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006281 NA coding CM030134.1 CM030134.1 1424407 ~ 1433866 (+)