CI01000016_04156457_04176927 (DDR1)


Basic Information

Item Value
gene id CI01000016_04156457_04176927
gene name DDR1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4156457 ~ 4177635 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04156457_04176927.mRNA
ACCCCAGGGTTTGAAAACCCCTGCTTTAGTGAATTTGCCCCAGTGCAACTACTGATACTAGTGAGACTAGTGAGAACAGTGTGTTTCCTCAGGACAGAGAGATGGAGGTGGAGTGGAGCTAAGTGTCGCTACGCTCTGGGGATGGAGGACGGCACCATACCTGACTCTGACATCACCGCATCCAGCGCCTGGTCCGACTCAACCGAGGCCAAACATGGCAGTGTCTTATACTTGGCCAGAAGAACATTTCAAGGTGAACTAGACTTCATTTTGCTTTGGAAAGGGTCTGTGAGACTGTGTCTTAATGGCTCTGAGGTCATGGTGAAGATTCAAGGGTTGAGTAATGGAGAGGGGGACGGGGCATGGTGTCCGGCTGGTCCGGTGTTTCCCAGCGGCTCAGAGTACCTGCAGGTGGACCTGCATAAGCTTCATTTCCTGTCTCTAGTGGGCACTCAGGGTCGCCACGCAGACGGGCTGGGGAGGGAGTTTGCACGTAGTTATCGGCTGCGTTACTCTCGTGATGGACGACACTGGATGACCTGGAAGGACCGCTGGGGACAGGAGGTGGTGACAGGGAACGAGAACACATATGATGTGGTCCTGAAGGACCTGGGTCCACCCATCATAGCACGCATGGTGCGCTTTTACCCACTGGCGGACCGTGTAATGAGCGTGTGTTTAAGAGTTGAACTCTATGGTTGTGTCTGGAAAGATGGACTGAAGGCGTACACCGCTCCCGTGGGTCATGTGATGACCCTCTCAGGCTCGCCTGTCTACCTTAATGACTCCGTCTATGATGGCAGTAAAGAGGCAGGGGTGATGTTCGGCGGATTGGGCCAGTTGTGTGATGGTGTTTTAGGTGGGAATGATTTCATGGAGAGTAAAGAGCTGAGAGTGTGGCCAGGATATGATTACGTGGGCTGGAATCGAGATTCCCTGGACCAGCCCACTGTTGACATTGAGTTTCACTTTGAAAAAACACGGGTCTTTCACACCATGCAGGTGCACAGTAATAACAGACACACTCAAAGTGTGCGGGTGTTCAGCGAGGTGGTGTGTGAGTTTAAGGCCAGTCTGTTGAGCCCGTGGGCGGAGCCTGCGCTGAGCCTTCAAGTGCCACTGTCTGACCTACATGACCCTTCATCCCGCACCATCTCACTGCCACTTGGAGGACAACCGGCCCAGATTCTCCGCTGCCGCTTCTCTTTCAGTGACCGTTGGCTCCTTATCAGCGAGATAAGCTTCTACTCTGAGCCGTTTGAGGATGGATCTGTCCTTCCTCCTCTCCCTTCCTCCAGCACTCGTCCTATCAATGCCACTTCTCCTCACACCCCCAGCCCTGCAAACGGAACCAGCAGCACCACCGACCTCCTCATGACCATTACTTCACTGCTGCCCAGCAGCATGCCAACAGAGTTCTCTGCCATCACTCTGAGGGCGGGGTTACCTGTGGCCAAAGATGACAGCAGCAACACGGCCATTCTGATTGGCTGTCTTGTTGGAATTATCCTGCTCCTATTGGCTATTATAGCCGTCATACTGTGGAGGCAGTACTGGAAGAAGCTACTTGGCAAGGCCCAAGGCAGCCTCTCTAGCGATGAGCTGCGGGTTCATCTTTCGGTTCCATCGGACAACGTGGTGATCAACAACACTAACACGCACACATACTCCAGCCGCTACCAGCGCATACACACTTTCCCTGACGACAGGGACCGAGAAGGAGAATACCAGGAGCCCAGCACTGTACTACGGCCCCGAGAGCAGCGGGACAGCACAGCACTGCTGTTAAACAACCCAGCATATCATCTCCTCCTGTCTGACCTGACACATGGCCCCAACAGGCTGACAAACTGCCACAGCCAGCAAGAAAAGCCCCAAAACCTGTCCCAGGCATGTGCTATTGACATGGTTGATAAAGGCCTACCCATTCAGGAGGGACCGCCTCCTTACCCTGGAGCTCCGCCCCCTGGTTTATCAGGGGCTCATTATGGAGAAGCATCAGGAGGCGGGGGGAGTGTCCCTCATTATGCAGAAGCTGATATCATCAGTCTGCAAGGCGTTAGTGGTAACAATACATATGCAGTTCCTGCCCTCTCAGCCACGCCCACTGATTGCCCACCATTGCCTGAGTTGCCACGGGAACGACTTATATTCAAAGAAAAGCTGGGAGAAGGACAATTTGGAGAGGTTCATTTGTGTGAGATTGAAAACCCCCAGGACCTTGCAAACCTTGAGTTCCCATTTAATGTCAGGAAAGGACGCCCTCTTCTGGTAGCTGTGAAGATTTTACGGCCAGATGCCTCTAAAAATGCCAGGAATGATTTTCTGAAGGAGGTGAAGATCTTATCTCGCCTGAAGGATCCGAACATAATCCGCCTGCTGGGTGTGTGTGTAAGCAGCGATCCATTGTGTATGGTCACAGAGTACATGGAGAGCGGAGACCTCAATCAGTACCTCTCTCATAGAGTGTTGCTGGACAAGACTGGACCTTCACATAATACACCAACCATCAGCTACCCAGCTTTGATCTCCATGGCGAGTCAGATCGCATCAGGAATGAAGTTCTTGTCGTCTCTGAACTTTGTGCACCGAGACCTGGCCACACGAAACTGCCTGGTGGGTGGAGAGAGGGGTGAGGGGGAGGACAGCGGTGGAGAGCGTCCAATAAAGATAGCTGATTTTGGCATGAGCAGGAATCTCTATGCTGGAGATTATTACAGGATACAGGGACGAGCTGTGCTGCCTATTCGCTGGATGGCATGGGAGTGCATCCTCATGGGGAAGTTCACTACGGCAAGTGACGTGTGGGCATTTGGCGTGACGCTATGGGAGATGTTGAGTGTGTGTCAGGAGCAACCGTACAGTCACATGACTGATGAACAGGTCATTGACAACGCAGGGGAGTTTTTCAGAGACCAGGGCAGACAGGGTTTGTATGAGCTGATGCTAAGCTGCTGGAACAGAGACTGTAAACTACGGCCTTCCTTTGCGTACATTCACTCCTTCCTCACCGAAGACGCCATGAACATGGTTTAGAGAGTAACAGAGAAGAAGAATGTAAGAAAGTGTGTGTGGACCACAGACTGGTGGTGTGTTTTTTAAGCAGACACGGCTAAGCACTCTTATGTAAATTAGTGTATTTTTTGATCAGTGGGTTGGGGCGAACAAAAGCCGCAGGTTCGGTGCCCCTAAATGACCCACTTCTCATCCCTTATCCTGAAATCCTGAACTCTTCAAGCAACATTTTATCCCCAAATCGTAGTGTTCCCCCACTATTCATACTTGTCACATCTCTATTTCACAGTATTTGGTTTCACAGAGCTCACATTTCCCAGAATGCACCACAGAAATGGCATTACTTTGCCTTATTTATTTTCTTTAAAAACCTGAGAATGAAATCTGTGTGTAAATGTGTCTTGCTGTGAAACTAAAGTCTTTTGTGTTCTGTGAGGTTCAGTACTGATGACTAAGCTCTGACAATGAGCTAACGGGAATAATATGAAATTGATTTTGGCATAAAATGTTGCTTGGCATCTGAACCTTAAATCCTGGTCCTGTAATCTGTATCAAAACTGTCTCTTCATTCCCTGAACACTGAATATATCTCAAAACATAATCATATGAACTGGTGGAGGGTTTTTGTAGCTAGATGACAGGCAGCACCAAAAGCACACGGCTCTACAAACTGTCCATTTAGTCGTAGTTATCTACAGGCAGCATTTGACAAATGATTGATTATACATA

Function

symbol description
ddr1 Predicted to enable collagen binding activity and protein tyrosine kinase collagen receptor activity. Predicted to be involved in positive regulation of kinase activity and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Orthologous to human DDR1 (discoidin domain receptor tyrosine kinase 1).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K05124 DDR1, NEP, CD167a; discoidin domain receptor family member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04156457_04176927.mRNA True 3744 mRNA 0.50 19 4156457 4177635

Neighbor

gene id symbol gene type direction distance location
CI01000016_04104194_04120918 GNL1, ZNF384 coding upstream 34949 4103904 ~ 4121508 (+)
CI01000016_04062946_04083356 CSN7A, COPS7A coding upstream 72897 4062703 ~ 4083560 (+)
CI01000016_04054332_04058529 NA coding upstream 97759 4054021 ~ 4058698 (+)
CI01000016_04038553_04043435 NA coding upstream 112883 4038504 ~ 4043574 (+)
CI01000016_04019056_04035116 NA coding upstream 121219 4019010 ~ 4035238 (+)
CI01000016_04193887_04198494 TUBB4B, TUBB4A, TUBB5, TUBB, TBB5, TUBB2B coding downstream 16252 4193887 ~ 4199380 (+)
CI01000016_04204029_04208418 MDC1 coding downstream 26394 4204029 ~ 4208715 (+)
CI01000016_04212233_04219411 NA coding downstream 34162 4211797 ~ 4219769 (+)
CI01000016_04234275_04238405 INO80E coding downstream 56640 4234275 ~ 4238501 (+)
CI01000016_04246693_04261518 VARS2, VARS coding downstream 69058 4246693 ~ 4261629 (+)
G95626 NA non-coding upstream 155357 4000781 ~ 4001100 (+)
G95623 NA non-coding upstream 162376 3993806 ~ 3994081 (+)
G95622 NA non-coding upstream 162983 3993274 ~ 3993474 (+)
G95621 NA non-coding upstream 163196 3993037 ~ 3993261 (+)
G95500 NA non-coding upstream 167346 3986772 ~ 3989111 (+)
G95649 NA non-coding downstream 193946 4371581 ~ 4371833 (+)
G95650 NA non-coding downstream 195351 4372986 ~ 4373220 (+)
G95659 NA non-coding downstream 240253 4417888 ~ 4418614 (+)
CI01000016_04428669_04441464 DEDD1 non-coding downstream 261923 4428669 ~ 4441464 (+)
G95673 NA non-coding downstream 339241 4516876 ~ 4517094 (+)
G95439 NA other upstream 292600 3862175 ~ 3862305 (+)
G93406 NA other upstream 3228925 905400 ~ 927532 (+)
G95648 NA other downstream 95001 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 656923 4829592 ~ 4837457 (+)
G95792 NA other downstream 1042245 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 1228234 5405791 ~ 5407963 (+)
G96389 NA other downstream 2983006 7160641 ~ 7161290 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location