CI01000016_04234275_04238405 (INO80E)


Basic Information

Item Value
gene id CI01000016_04234275_04238405
gene name INO80E
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4234275 ~ 4238501 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04234275_04238405.mRNA
ATGAACGGACAAGCTGAAGTAGAGGTGGATTACAAGAGAAAATACAAAAATCTCAAACGCAAATTAAAGTTTCTAGTATATGAGCAAGAGTGTTTTCAGGAGGAGTTGAGAAGAGCTCAGAGGAAACTATTAAAAGTTTCTAGAGACAAAAGGCTGTTGCAGTATGAAAGAGTGGATGAAGAGTCTTCTGACTCTGATGCGACAGTTTCCTCAGACAGCGATGGAGAGGGAGCCAGAGAGAGAGACAGGGATGCAGGGAAAAAGAGGAGAAGTCCTGGAGTTCCTCCCATCCCGTCGGCCTCATCTCCTCATCTCTCACTCCTGTCCCGTTCTGGTGCGGTTCCTCTCCAGTCATCTGCTCCAGCACAGTACCTCAACACATTACCCTTTCCTCCTGAGTATTTGGCTCCCTCTGCTGAGCGTGTGAAGAAAGAGAGAAAAACAAAACTGGCCAAACAGAGGAAAGACGGTTCAGGGAAGGTGGTTGGCCCACTCACGTCTAGTTACCCTGCAGGCGGTGGTGCAGCTGGGGCTGCGAGTGGGCCGTTCAGCTGGGTCCCACAGCAGATGCTGAGTGAGGATGCAGCCGAGGAAGAGGGAGACAGCGAGGGAGATAGTGACCAAGGAGAGGAGGAGAGAGGAGAGGGTGACGAGGCAGAGCTGGTCATTGACATACCCAATGAGTGAAGGTAATAGAAAAATACAGGCCTCTGTCAGCATTTAGCAGCAGCTACAATTACTGAAAAATCTTTCTGACTTTTCATCATTCTGGATTATATGTTA

Function

symbol description
ino80e Acts upstream of or within brain development. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Is expressed in brain. Orthologous to human INO80E (INO80 complex subunit E).

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG:

id description
K11669 INO80E; INO80 complex subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04234275_04238405.mRNA True 783 mRNA 0.49 7 4234275 4238501

Neighbor

gene id symbol gene type direction distance location
CI01000016_04212233_04219411 NA coding upstream 14506 4211797 ~ 4219769 (+)
CI01000016_04204029_04208418 MDC1 coding upstream 25560 4204029 ~ 4208715 (+)
CI01000016_04193887_04198494 TUBB4B, TUBB4A, TUBB5, TUBB, TBB5, TUBB2B coding upstream 34895 4193887 ~ 4199380 (+)
CI01000016_04156457_04176927 DDR1 coding upstream 56640 4156457 ~ 4177635 (+)
CI01000016_04104194_04120918 GNL1, ZNF384 coding upstream 112767 4103904 ~ 4121508 (+)
CI01000016_04246693_04261518 VARS2, VARS coding downstream 8192 4246693 ~ 4261629 (+)
CI01000016_04321053_04331396 NA coding downstream 82552 4321053 ~ 4332239 (+)
CI01000016_04365155_04367358 NA coding downstream 125784 4364285 ~ 4367947 (+)
CI01000016_04400456_04412173 ATP1A3A, ATP1A3B, ATP1A3 coding downstream 161955 4400456 ~ 4413072 (+)
CI01000016_04428669_04441464 DEDD1 coding downstream 190168 4428669 ~ 4441464 (+)
G95445 NA non-coding upstream 52334 4077383 ~ 4181941 (+)
G95626 NA non-coding upstream 233175 4000781 ~ 4001100 (+)
G95623 NA non-coding upstream 240194 3993806 ~ 3994081 (+)
G95622 NA non-coding upstream 240801 3993274 ~ 3993474 (+)
G95621 NA non-coding upstream 241014 3993037 ~ 3993261 (+)
G95649 NA non-coding downstream 133080 4371581 ~ 4371833 (+)
G95650 NA non-coding downstream 134485 4372986 ~ 4373220 (+)
G95659 NA non-coding downstream 179387 4417888 ~ 4418614 (+)
G95673 NA non-coding downstream 278375 4516876 ~ 4517094 (+)
G95439 NA other upstream 370418 3862175 ~ 3862305 (+)
G93406 NA other upstream 3306743 905400 ~ 927532 (+)
G95648 NA other downstream 34135 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 596057 4829592 ~ 4837457 (+)
G95792 NA other downstream 981379 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 1167368 5405791 ~ 5407963 (+)
G96389 NA other downstream 2922140 7160641 ~ 7161290 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location