CI01000016_04212233_04219411


Basic Information

Item Value
gene id CI01000016_04212233_04219411
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4211797 ~ 4219769 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04212233_04219411.mRNA
TTATAAATCCCCTCTGAGATACCAGATCAATGTCAGTTAGAAAAGTCAAGCCAATAAACCCACAATTACTGACACGTCCAAATAATTCTTTAAAGAGGCTCATTTGTCAACACAGCCCTTTTAGATTCATGGCCTGATGATCTACGTCAGAGCCCATAAAAGCTGAAAAACATAAATGTCTGTCTAACATTAACATAAACTGATTTGTTTTATAGTTACACCCTATATTTACAAGTACACATCGAAGCACTCAATCGACCTGTGTCCGTTTGCCAACACTGCCATTTTGATCACTGTTGTTCTGTTCTCTAGCAGGAATGTGAAAGCAATTGAGCAATGTACCATAAAACTTATACAATTACAACGTCATTGTTTGTAATTTAAATCCTCTTTGAATGTAAATGTATTTTTATCTGTAAATGTTTTCAGAGCCAATATGCAGAATCTGAGACTGCTCATCTTAAGCGTGCTGTTCCACTCAGCCCAAGAACTGTCCCAGACATTGTTTTTTGGGGAAGACTTCCACATCCCCATGCCAGCAGGTAATGCTGAAGTGTTGTTCAGGCCTTCGATTGTTCCAGGACGTGAGAAGTCGCTGATGAGTTCTGGGAAAGTGGTTGATCTTCGTGCCAAACTCAACATTGCTTTGACCCACCTGATCTTGGAGAATGTTGGAGAAAGTGATGAAGGAGTCTACACCATCAAATCTGACCAAAGCGCAGAGGATATTACACGCATCACACTCTATGTTAGAGATTGCTCTAGTGAGCTCATTGTTAAGTATGGTTCAGATTTTCACGTTTCGCTCAATGATATCTCAGAGTCGGTGGGTGTGGGCTTTCGTCACAGCTCAGTGGAGGCTAATCAGACTTCACTACCGGCTGTGGAACTGCTGAAAGTTGATGGAACATCCATGGAGAACTACCAAGAGCGCATCGAGATCACTCCTCAAAAGTTCACTCTGCGTGCTGTTACAGGGGCTGATGAAGGCAGTTACACCTTCACCGACTCCAGTGGGAAAGTCAAGAAGAAGATCTGCCTGAATGTTAAAGCTCGCCTGCTGTACACCCCTAAGTCTGATAACCACAAGTATTTGATTATGGAGAGCGGACAGATCAACCTGCCTCCTAACCTGGATCTGGAAGGTCGCCTCTCTTTGGAGGATTCTATGTGTCTTCTGACAGATGTGAAGGCCAGTGATGCTGGAGTTTTCAGTGTGACTGACCTTCAGGGATTCCTGGTGTCTGATGTTCACCTGGAGATAGAAGCATACAAGCTTCCTAAACTCTACATTGCCATCATCGCTTTGGTAGCATTATTGGTGTTGCTGCTTTTGGTGTGCTTGGTGTCATGTTTGGTGAAGATACGCAAACGTGCAGCAAAAGCCAGAGCCATTGAGGAGAAAGCCCAGAATGCAGGGAAAGTGGAGGGTGATACCTTCAGAAAGGTTGTGAAAGAAGCCTGTACCCGTCAGAATGAGGAAGCCCCGGCCCTGTCACAGAAAGAAGACATCACTGAGAAATCACAGAGCACAGAGGTCAGCATTAAGGGTTTGGAGGTGTCTACTAAAGAGCCAAGCCTACAAGAGAGGAACATGGAGACCAGTGACTCTGGAGTGGGCTTTAATACCACTGGGCTCCCACTTGACAGTGACACTGATGCCCCAACAATAGCCTTAGCAGATTCTGATGTATTGAGTACCTCTGCTGCTCCTGACGTCAAAGCCATTCCCAACCAAGTTCCAGAGCCAAAGACGGCCCCCTCACCTCCAAAACCAGCACCAACTTCAGATCTAAAACCAGCACCTGTGACCAAGTCGACGGCTCCTCCACCACCTTCTCCTGAACCCAAACCACCAGTAACACCAACACCTGAATCCAAACCTGCTGCTACACCTGAACCAAAAGTGACCATCTCACCACCACCTGAAACAAAACCAACCTTAAGCCCATCGCCAGAACCCAAACAACCCGTGACACCTGATCCGAAACCAATAAGTCCAGCACCTGAGGCTGATGTTAAACCAATTCCAAGTCCAACCCCTGAATCTCCAAAAGCTTCATTGCCAACTCCTGATGAGAAACCAGCCATTACTCCAGATGCCAAACCAGCAGTTTCACCTACTCCTGAACCCACACCAGCTAAAGTTGGCACCCCTGAACAGAAACCCACCTTAAGCCCCACACCTGATCTCAAGACCCCGGATCCTAAACCGGTTTCTCCAATCTCTGAGCCTAAGCCACCAGTCTCACCAATTCTCGACTCGAAACCAACTACAAATGGTACTCCTGAATCCAAGGAGCCAAGTGCACCTTTATCTCCTGGCCTGGATGCGAAGGGCACTACTCCTCCTAAAACCCCCGAATCTGGGAAAAGCTCAGTCAAAACTCCTGAGCTCATCTCCAGTGGAGGTCTAGACTCGGCTTCTCCCAATGACAGTGCACCACCTTCAAGCACTGATGGAGCTGCCACCAACTGAGATTAAAACCGTAGCCTCGTTCCTGCCTCCTCCTATATTAACCACCACAGACAATCTAGACACTTGACTTAACAAAGAAGAGCTAAGTGACTTCCTAAGGGGGTGGGTTCCTCAGTCTTTTGAGTCTCACTTTTAATACAATTAACATGCATCAATGGAAAGATCCACTGTAAATTCACTCAGTTTACTAATATTTAATCAGCCCATAAAAGGGTTCGAATACAGAGATGAAGCACTTCAGACCTTCGACTGATTTGACACAGAATGAGGGAGGCCATCTGGGGTATTCCAAGAAAGTGTACAAAGACAAATCTTCCATCACAGAAATAATACATCACTGCATGAAGATAATGAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04212233_04219411.mRNA True 2837 mRNA 0.46 7 4211797 4219769

Neighbor

gene id symbol gene type direction distance location
CI01000016_04204029_04208418 MDC1 coding upstream 3082 4204029 ~ 4208715 (+)
CI01000016_04193887_04198494 TUBB4B, TUBB4A, TUBB5, TUBB, TBB5, TUBB2B coding upstream 12417 4193887 ~ 4199380 (+)
CI01000016_04156457_04176927 DDR1 coding upstream 34162 4156457 ~ 4177635 (+)
CI01000016_04104194_04120918 GNL1, ZNF384 coding upstream 90289 4103904 ~ 4121508 (+)
CI01000016_04062946_04083356 CSN7A, COPS7A coding upstream 128237 4062703 ~ 4083560 (+)
CI01000016_04234275_04238405 INO80E coding downstream 14506 4234275 ~ 4238501 (+)
CI01000016_04246693_04261518 VARS2, VARS coding downstream 26924 4246693 ~ 4261629 (+)
CI01000016_04321053_04331396 NA coding downstream 101284 4321053 ~ 4332239 (+)
CI01000016_04365155_04367358 NA coding downstream 144516 4364285 ~ 4367947 (+)
CI01000016_04400456_04412173 ATP1A3A, ATP1A3B, ATP1A3 coding downstream 180687 4400456 ~ 4413072 (+)
G95445 NA non-coding upstream 29856 4077383 ~ 4181941 (+)
G95626 NA non-coding upstream 210697 4000781 ~ 4001100 (+)
G95623 NA non-coding upstream 217716 3993806 ~ 3994081 (+)
G95622 NA non-coding upstream 218323 3993274 ~ 3993474 (+)
G95621 NA non-coding upstream 218536 3993037 ~ 3993261 (+)
G95649 NA non-coding downstream 151812 4371581 ~ 4371833 (+)
G95650 NA non-coding downstream 153217 4372986 ~ 4373220 (+)
G95659 NA non-coding downstream 198119 4417888 ~ 4418614 (+)
CI01000016_04428669_04441464 DEDD1 non-coding downstream 219789 4428669 ~ 4441464 (+)
G95673 NA non-coding downstream 297107 4516876 ~ 4517094 (+)
G95439 NA other upstream 347940 3862175 ~ 3862305 (+)
G93406 NA other upstream 3284265 905400 ~ 927532 (+)
G95648 NA other downstream 52867 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 614789 4829592 ~ 4837457 (+)
G95792 NA other downstream 1000111 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 1186100 5405791 ~ 5407963 (+)
G96389 NA other downstream 2940872 7160641 ~ 7161290 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009717 si:dkeyp-77h1.4 coding NC_007127.7 CM002900.2 10346277 ~ 10369298 (+)