CI01000016_04104194_04120918 (GNL1, ZNF384)


Basic Information

Item Value
gene id CI01000016_04104194_04120918
gene name GNL1, ZNF384
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4103904 ~ 4121508 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04104194_04120918.mRNA
CCATAAATAGACTTACGGTAAACATCAGCTCTTCCTGAATAATATTTCCTGCATAATTCATGTTGTCCAGTTCTATATATAATTGTGTTATTAAAACGGTTTATTTGTAAAATGTGAATTTACTATTATTATTATTATTAGTTTCTTTCTGAAACTTTTATCATATTATATTGCCCCACAGGTAAATTTTTTTATTATTATAATGTATAAAATAAAATTGTTTGTCCCTATCCGTAAGGTCAAAGATTACAATATGTTATCAAAATGTTTACTTTATTTTATCAGGGGTGATGGAGGATTCCCATTTCAATTCTTCATATTTCTGGTCTCCTGTGCAGGGACAGATTGAGAATGCTGTATTTCTCAATAAGGTAAAGGAGCAGCTTGGTCAGGACAAAAGCCCCACCTACTCGCATGGCCCCGCCCACTATCCCACTACAGCGGTGGTGGCGGTTTCTGGGGGTGCCATGGATACAGCAAGGACACTAAAACAAGAGCATGCACAACCATCCCAGTCCTCACACAGTATCACAGTGGTGCCGGTACCGCCTACGGGCATCATGACGGCAGCGGGTTTGGTCACTCTGGTGTCTCCAGTATCATCTGCTCAGTCCCTTATTCCTGGACACCCATCCACCACCATGATAACAGTCCAAACGGACAAGAGAAATGACTCCTTGCCCTGCTCGCCGGTCATCATCCCATTACCGTCGAAACGGGGCAGAAAGAAGAAAGCCACACTCCCTTTGGTTGGATCACCTACTGGGACAGATCCCATGATTTTGGGTCTTTCAGGACAGCATCATTCTGCCAACCCTTACAGTCTGTCCCCAGAAGAAGGGCATGCTGGGAAAGAAGGCGGTAAAACATACAGGTGCCGGATGTGTGGTTTGACGTTCTGCAGTAAGTCAGACATGCAGCTGCACTCCAAGTCGCACACGGAGGTGAAAGCTCACCAGTGTCCGCACTGCTCCAAATCCTTCGCTAACACCAGCTACCTGGCCCAGCACATCCGCATCCACAGCGGTGCCAAGCCCTACACCTGCTCCTACTGCCAGAAGGCTTTCAGACAGCTCAGTCACTTACAGCAACACACACGAAATCACACAGAATCCAAACCTCATAAGTGTCCTCATTGCTCGAAATCCTTTGCCAACTCAAGCTACCTTGCTCAGCATATACGAATCCACACAGGGGTTAAACCTTACACCTGTACCTACTGCCAGAAGTCCTTCAGACAGCTTAGTCACTTACAGCAACACCACAGAATCCACACAGGAGACCGGCCATACAAATGTACACACATGGGTTGTGAGAAGTCTTTCACTCAACTCTCTAATCTGCAGGAGACGTATCTGATGAAACACATGCGTAAACACGCCCCAGATATGCTGCCGTCTCCACCCGGATCAACCCAACAAAGTCACAGCCCAGGTCGTGTTGGAGGAGGCGGATCAGAAGGAGACATACAGAGCCGAGCTGAGAGGACCGACATTTTCGGCCAGCCAGCCGGTGTGCCGTGCGTATTCGACCTGAACCAGTACAAACCAGTAACTTCTGCAGATGTGCAGTATAAAACTGTCAGTGTGTCTGACATCTCGCCTCACAAAGACCTCTGCATCACTGTGGAGGCTTCTGCCATACAGGAGAAACAGGTTCAAGTCACAGTAGCCGAAATGCCAGTGTGGAGAGAGGACCTGGCAGAGACAGACAGTCCGATACATCAGACAGCGAGACGACAGACATCAGGAGGATCAACCATCAGCCTGGCACCAGAGACGGCAGATATGACCCCAACAGGCCTAAATTTCCCACGGCGGCCCTCATGGCATTACGGCATGCAGCGAGAGGAGTTGCTGCGGAAAGAGGAGAAGTCATTTCTGGAGTATCTGAACACTCTTCACTCCAAGAACCCACCCGGTACCCTCAGCCACTTTGAGCACAACCTTGAGACATGGAGGCAGCTTTGGAGAGTAATTGAGATGTCTGATGTCATTCTGCTCATAGTGGATATCAGACACCCAGTGCTGCAGTTTTCTCCTGCTCTGTATCACTACATCACCGGTGAGTTAAAGAAGTACATCATCCTGGTGCTCAATAAAGTGGACTTGTGCCCTGCCCCACTGGTGTTGGCATGGAAACACTATCTGACTAAACAGTTCCCCCACCTGCACTGTGTCGGCTTCACCTCGCACCCAGGACAACCCTACAGCACCCTTCTACAGAAGAAGAGGGTGAGGAAGAAAGCAGGATGGAATCAGGTAGGAGGGCCGTTCCAAATCATGAAAGCGTGTCAGGAGATCACAGCAGGAAGAGTGGATTTGAGTAGCTGGGAGAAGAAGATCCAGAGGGATGCTGTTGCCGTGGGAACAGAGGGGGATCAGGCTGATGATGGATCGGACTCTGTGCTGATGGAGCATCATAGTGACATTGCCATGGAAATGAACAGCCCCACGCAAGAACTTTATAAAGATGGAGTACTAACCTTGGGCTGCATAGGTTTTCCTAATGTAGGCAAATCTTCAGTGCTGAACAGTCTGGTTGGCAGGAAGGTCGTGAGCGTGTCTCGAACTCCAGGTCACACAAAATATTTCCAAACATACTACCTCACTCCCACTGTGAAACTGTGTGATTGTCCTGGGCTGGTCTTCCCTTCCCAAGTGGACAAGCAACTACAGCTACAGGAGCCTTACAGTTCAGTAGGATACCTGTGTGAACGGACCGACTTCCGGTCTATATTAAAGCTGAAACATCCCAACCACAGTCCAGGAACTCCAAGTGACCCCGACACAGAGGACTGGACAGCATGGGACGTGTGTGAAGCCTGGGCTGAAAAGAGAGGGTACAAGACTGCTAAAGCGGCCCGTAATGATGTTTATCGAGCAGCCAACAGTCTACTGCGATTAGCCATCGACGGACGCTTGTGTCTGTGTCTGCGGCCACCTGGATACTCTCAGAGTAAAGATGAATGGGAATCTCACCCAGACCTGACTGAGATCATCGCTCTACAAGGAAGAAAGGACGAAGAGGAAGAATGTGTAGAAGACGACGATGGCGAATCCAGCTCAGAGCTGGAGGAGGACAACGATCGGGACGCAGATGATGATGAGGACGCTTATGGGGATGATGAAGATGATACCGTGAAGGCTGACAAGAAGGGCCTCACTCTCAACATGTTCAATGTGCTAGGAGAGAACGAGTGTGAGTGAGGGATGAGATCTCATTCCATGTTCATACATTCCGGTTTCTCTATTTATCACTGATTTCTTTATGACCATCTCATTTCAATCTGCAATGTGTCAATCAAAGGACTGTATGAAGTTTTGAACATTTATTTCTCATTTGACACTCGTCGCACACTTATACAGCCCATTGTATAGACAGTATAAAGCTGGTTTTTGTGTTCTATTTCAACCTCTCCGTGCCTCTGTACCTTCTCTGCTTTTCATTTATCATCATCAGAAAAGTATCAAAATACTATGAAAACTTTTGTACCTCCTGCATGCAGCCTTTTCCCTTTCTGAGAGGGCAGAGGGAATGTCTGTACAACCAGTGATTGTACAATCAATGTTACTAAAACAAGCATTGATGAATACAATCACTGATTTATTGTCAATCTCACAGCAGTGATGCCAAAGGTCAGGTGAGGTCAAAAGTCACACTTTGACCTCAAACTGTGAGTTTCTCCCGTGCGAATGTATTTTAACCTCTGTCTCAGTACCGCAAACCTTGGCATGTAGGGCAGAACCATGTCATGTATGAGGATAAGAAATAGAGGCACAGGCTGAAGATTATTCTA

Function

symbol description
gnl1 Predicted to enable GTPase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GNL1 (G protein nucleolar 1 (putative)).
znf384 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0003924 GTPase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04104194_04120918.mRNA True 3799 mRNA 0.47 19 4103904 4121508

Neighbor

gene id symbol gene type direction distance location
CI01000016_04062946_04083356 CSN7A, COPS7A coding upstream 20344 4062703 ~ 4083560 (+)
CI01000016_04054332_04058529 NA coding upstream 45206 4054021 ~ 4058698 (+)
CI01000016_04038553_04043435 NA coding upstream 60330 4038504 ~ 4043574 (+)
CI01000016_04019056_04035116 NA coding upstream 68666 4019010 ~ 4035238 (+)
CI01000016_04008568_04016209 NA coding upstream 87402 4008520 ~ 4016502 (+)
CI01000016_04156457_04176927 DDR1 coding downstream 34949 4156457 ~ 4177635 (+)
CI01000016_04193887_04198494 TUBB4B, TUBB4A, TUBB5, TUBB, TBB5, TUBB2B coding downstream 72379 4193887 ~ 4199380 (+)
CI01000016_04204029_04208418 MDC1 coding downstream 82521 4204029 ~ 4208715 (+)
CI01000016_04212233_04219411 NA coding downstream 90289 4211797 ~ 4219769 (+)
CI01000016_04234275_04238405 INO80E coding downstream 112767 4234275 ~ 4238501 (+)
G95626 NA non-coding upstream 102804 4000781 ~ 4001100 (+)
G95623 NA non-coding upstream 109823 3993806 ~ 3994081 (+)
G95622 NA non-coding upstream 110430 3993274 ~ 3993474 (+)
G95621 NA non-coding upstream 110643 3993037 ~ 3993261 (+)
G95500 NA non-coding upstream 114793 3986772 ~ 3989111 (+)
G95649 NA non-coding downstream 250073 4371581 ~ 4371833 (+)
G95650 NA non-coding downstream 251478 4372986 ~ 4373220 (+)
G95659 NA non-coding downstream 296380 4417888 ~ 4418614 (+)
CI01000016_04428669_04441464 DEDD1 non-coding downstream 318050 4428669 ~ 4441464 (+)
G95673 NA non-coding downstream 395368 4516876 ~ 4517094 (+)
G95439 NA other upstream 240047 3862175 ~ 3862305 (+)
G93406 NA other upstream 3176372 905400 ~ 927532 (+)
G95648 NA other downstream 151128 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 713050 4829592 ~ 4837457 (+)
G95792 NA other downstream 1098372 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 1284361 5405791 ~ 5407963 (+)
G96389 NA other downstream 3039133 7160641 ~ 7161290 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010638 gnl1 coding NC_007127.7 CM002900.2 21651712 ~ 21668082 (-)