CI01000016_06270425_06375483 (COL14A1A, COL14A1)


Basic Information

Item Value
gene id CI01000016_06270425_06375483
gene name COL14A1A, COL14A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6270425 ~ 6375483 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_06270425_06375483.mRNA
GTGGATCAGTTTGTCTGCACAACTCCTGCCATCGCAGATATTGTCATCCTGGTTGATGGATCATGGAGTATTGGAAGAATCAATTTCCGTCTGGTTCGCATGTTCCTTGAAAACCTGGTCAATGCCTTCGATGTGGGGATAGACAAAACCCGGATTGGACTGGCCCAGTACAGTGGAGATCCAAGAATTGAGTGGCACTTGAATGGCTTCAGCACAAAAGATGCAGTAATAGATGCTGTCAAAAACCTGCCTTACAAGGGAGGCAACACTCTCACAGGTAATTTGCTGTGTTTTTCCAGACTTTTTCCATTCTTCAAACCTGAGTCTGGGGCTCGTGCCGATGTTCCCAAAATTGGAATCCTGATAACCGACGGCAAATCCCAGGATGACGTTATCCCACCTGCTCAGACCCTGAGAAGTTCTGGAGTCGAATTATTTGCCATTGGTGTGAAGAATGCTGATGAGAACGAGCTGAAGGCCATTGCCTCTGAACCAGAGGGCACACACGTTTATAATGTGGCTGACTTCAGTATCATGAGCACAATATTGGATGGTCTGACTAGGAAGGTGTGTGATGGAGTGGAGCAACAGGACAAAGAAATAAATCGAGATTCTTCCACTGAAGAAACTGTGTCCCCACCCCAGGACTTGGTCATTTCTGAGGTGACTGCACACAGTTTTCGTGTGTCCTGGACTCATGCGTCTGGAAGTGTGGAAAAATATCGGGTGGTTTACCAACCAACCAGAGCAGATATTCTGGAAGAGATTGTGGTGGGCGGCACAGAGAATTCAGTTGTCCTGCAGAATTTGAACTCTCTGACTGAATACGAGATTGCTGTGTTCGCTGTGTACCGCAGCGCAGCGAGTGACGCTCTCAGAGGAAACGAGATCACGCTGGCTCTACCCACAGTGAGTGATCTTGAGCTGTACGAAGTGACAGACAACAGCATGAGAGCCCGCTGGAGGGATGCAGAAGGGGCTTCTGGGTACATGATCCTTTACGCTCCACTGAGCAGTGAGACTACAGATGAAAGAGAGCTAAAGGTGGATGAGACAGTGACTGATGTGGAACTGAAGGGATTGATTCCTGACACAGAGTACACCGTTACGGTCTATGCCATGTTCGGAGAGGAGGCCAGTGATCCCGCTACTGTTCAGGAGACCACCATGTCCCTGAGACCTCCGCGTAATCTGCGGGTCACTGAAGTTGACCACAGCTCTGTCCGTCTCAACTGGGATGCAGTGTCCAATAAAGTTAAGGGCTACCGTGTCATATATATCAAGACAGATGGTGTCCAGACCAATGAGGTGGAGTTGGGTCCCGTCACCAATGTGTACCTGAAAAACCTGTCACCCTTAACAGAGTACACAGTTGGTGTTTTTGCTCTATACGACGCCGGCCAATCAGAGGCTCTCAGTGGCGGATTCACTACAAAGCTTGTGCCAGCCCCTTTTAGCCTGATGACATCAGAGGTCACCTCAGAGAGTTTCCGGGTGAGCTGGTCACATCCTGCCAGGGATGTGGTGCTTTATAAGATGGCCTGGTCTCCCACTGGAGGAGGAGACGAGAGAGAGATGATGCTGAATGGAGCTGTGGACTCATATGTGATTCAAGACCTGAGTCCTTTTACAGAGTATAAGGTGTCACTGTCGGCCATCTATAATGATGAAACGGAGAGCAACGCTGTGGTTGTGCTTGAAAATACATTGGACTGGACCACAGAAGTTCCAACCACCATTCCCTCCACTACAGCAATTGTTCATCTGGGATTGACTAACCTATGGGTGGACGAGGAGACCCACTTCAGTATGCAAGTGAACTGGGAGGTGCTGGACTCAGACGTGGAGCAGTATAAAGTGACATATGTCAGCGCAGACCGCACAGAAGAGACAGTATTAGTCTTGGGAAACAGAAGAAGCGTGATCCTGCAACCACTCCTCTCAGACACAAGGTACAAGATCACGGTGACCCCTATTTATGCAGATGAAGAGTCCACGGCACTATCCATGTCCTCTTCCGGCAAAACAATGCCACTTCCTGGCCCCAGTAACCTCAGGGTGTCTGATGAATGGTACAATCGCTTCCGCATCAGCTGGGACGGACCTCAGTTCCCCACTATGGGTTACAGGGTCATCTACCAGCCTATCTCTGTGTCAGGTCCGGCTCTAGAGACGTTTGTAGGAGATGATGTAAACACCCTGCTGATCCTCAATCTGTTGAGTGACACTGAGTACAGCGTTCAGGTCATCGCCTCCTACACCACCGGATCCAGCCAACCCCTCACCACCAAGGGCAAAACACTGTTCCTGGGGGTGAGCAATCTCAGCACAAAACAGGTGCTCAGTACCAGCATGTGTGCCCAGTGGCAACCTCACCACCATGCCTCCCTCTACCGAGTCGTCATTGAGTCACTGCTCAACGGTCAGAAACAGGAAAGGAGGGTTGGTGGTGGTGCATCCAGAGAGTGCTTCTTTAACCTTTCCCCCAACACCCAGTACAAGATCAGCGTCTACACCCTTTCACAGGATACAGAGGGCCCTGCCGTCACCACCATGGCGACCACTGCTCCAGCACCCACCCAGCCACCAACCTCACCACCCACCACGATCCCTCCTCCTACCATCCCCCCAGCCAAAGAAGTTTGCAAAGCAGCCAAGGCAGACCTGGCCTTCCTTGTAGATGGCTCCTGGAGTATCGGAGATGACAACTTTCAGAAAATTATCCGTTTCCTATACAGCACAACTGGTGCACTTGATGTGATTGGCCCCGAGGGAACACAGGTGGCCATTGCTCAGTTCAGTGATGATGCCAGAACTGAGTTCAAGCTCAACTCCTATAGCGATAAGGAAGCTCTGCTGGATGCCGTGCAACGCATCACATACAAGGGAGGAAACACCAAGACAGGCATGTATCTCTATCGTCGAGCCATTAAGCATGTGAAGGAGGCCATCTTTACTGAGGACGCGGGCGTACGGAGGGGCATTCCTAAAGTGCTGGTGGTGCTCACGGACGGGCGCTCTCAGGATGATGTCAACAAGATCTCCAAGGAGATGCAGATGGAGGGATACATCATCTTTGCCATTGGCTTCGCTGATGCTGACTACGGGGAGCTGGTGAACATTGCCAGCAAGCCTAGCGAAAGACATGTGTTCTTTGTGGACGATCTGGATGCCTTCAAGAAAATTGAGGAACAGCTCATAACTTTTGTTTGTGAGGCTGCAACTGCCACTTGCCCCTCGGTGTTAATGAGTGGGAACACTTTAGCTGGTTTCCGTATGATGGAGATGTTTGGTTTGGTTGAGAAGCACTACAGCAGTGTGCAAGGTGTCTCAATGGAGCCTGGGACTTTTAACAGCTTCCCCTGCTACCGGTTACACAAGGACGCCCTCGTCTCCCAGCCTACCAGGTATCTACATCCTGAAGGCCTTCCCTCCGACTACACTATATCTATGCTCTTTCGCATACTGCCTGAAACTCCTCAGGAACCTTTTGCATTGTGGGAAATCCTTGACAAAAACAATGAGCCACTGGTGGGCATTATCCTGGATAACGGAGGGAAAACATTAACCTTTTTCAATTACGACTACAAGGGTGAATTTCAAACGGTGACTTTCGAAGGAACTGAAATCAAGAAGATTTTCTATGGCAGTTTCCATAAGCTTCATGTGGCCATCAGCAAAACCGCCGCTAAAGTGGTGATCGACTGCAAAACGGTTGGAGAGAAATCCATCAATGCCGCAGGTAACATCACCATTGATGGAGTGGAGGTTCTGGGACGCATGGTCCGCTCACGTGGAAGCAGAGAGAACTCCGCGCCGTTTCAGCTCCAGATGTTTGACATAGTCTGCAGTATATCATGGGCCAGTCGGGATAAGTGCTGTGAGCTCCCAGGCTTGAGAGTAGAAGAGGACTGTCCTGCCATGCCCCATGCCTGCACCTGTGCTCAGGACAGCAAAGGACCACCTGGACCCTCGGGACCACCGGGCGGTCCTGGTATCAGAGGTTCAAGAGGAGATCGGGGGGAGCCAGGCTTGACGGGGCCTCAAGGGCCACCTGGTGAGATGGGACCTTTAGGACCACAGGGGCCACCGGGTCCTCAGGGGCCAAATGGACTGTCCATTCAGGGGGCACCTGGGGCTCCAGGAGAGAAAGGAGAGAAGGGTGAAATAGGTCTGCCAGGTCCTCAGGGTGTACCAGGTGCCAGTGGAGGACCAGGCCGAGATGGACCTCCAGGACAAAGAGGTCTACCGGGTAAAGATGGACCCCAGGGACGACTGGGCCCTCCAGGACCAATGGGCAGCCCTGGTGCTCCTGGGGCTCCAGGATCAAGTGGACCACCAGGGCAAACTGGTGATCAGGGGCTACCTGGGCCTCCCGGCACTAAAGGCGAACGAGGAGAGAGAGGTGACATGCAGTCTCAGGCCGCTGTCCGCGCCATAGCAAGACAAGTTTGTGAACAGCTCATTCAGAGTCACTTGTCTCGCTACAACTCTATCCTGAACCAGATTCCCAGTCAGTCTGTTTCAGTACGGACAGTACAAGGTCCACCAGGTGAGGCCGGTCGGCCAGGACCTCCGGGGCCACAGGGAGAGCAGGGTCCTCCTGGCAGACCAGGATTCCCTGGAGCCAGTGGGCAAAATGGCCGCCCAGGAGAGAGAGGTCTCCCTGGAGAAAGGGGAGAGAAGGGCAATCCAGGGGTAGGGACACAAGGTCCTCGTGGTCCTCCAGGACCTCCAGGGCCTCCTGGAGAAGGTCGGACAGGAAGTCAGGGCCCTCCAGGGAGACCTGGAATTCAAGGCACCTCAGGACGTCCAGGTACCCCTGGTAGCCCTGGTGCTGCTGGACCCCCCGGCTACTGTGACCAGAACTCCTGTCTCGGGTACAACGCTGGAGTACAACAGTTACCCTCCAACCCCTACCAAAACTACGGCCCCGCCACCAACTACGACGACGAGGAGGATGACGAGGACCCTTACCGTGGCTACCGTGCCTACCCTCCTCAGTTCTACCAACCCAGCTACCCTGACCCCCATGCCTCCAGGCTTGGCCCCGCCCACCCCGGTGACACGGTGGGGATGAGGTCACCTGGCATGCGTCGCTTCTCCCGCAGCACGGCCGAAGAGGGGAGCATCGGTGAGTCGGAAGTACAAGTGAAGGCCGAA

Function

symbol description
col14a1a Acts upstream of or within basement membrane assembly. Located in basement membrane. Is expressed in several structures, including integument; median fin fold; nervous system; pectoral fin bud; and pharyngeal arch. Orthologous to human COL14A1 (collagen type XIV alpha 1 chain).
col14a1 Enables RNA binding activity. Predicted to act upstream of or within several processes, including collagen fibril organization; homeostasis of number of cells within a tissue; and regulation of cell growth involved in cardiac muscle cell development. Located in extracellular space. Colocalizes with collagen-containing extracellular matrix.

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K08133 COL14A; collagen type XIV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_06270425_06375483.mRNA True 5163 mRNA 0.53 43 6270425 6375483

Neighbor

gene id symbol gene type direction distance location
CI01000016_06174800_06210259 DEPDC6, DEPTOR coding upstream 59394 6174800 ~ 6211031 (+)
CI01000016_06158996_06159538 NA coding upstream 110700 6158722 ~ 6159725 (+)
CI01000016_06058748_06068258 POLR3C coding upstream 201777 6058748 ~ 6068648 (+)
CI01000016_06038939_06045122 GBA coding upstream 225023 6038939 ~ 6045402 (+)
CI01000016_06030950_06038330 DAP3 coding upstream 232095 6030950 ~ 6038330 (+)
CI01000016_06398455_06420062 MTBP coding downstream 22972 6398455 ~ 6420138 (+)
CI01000016_06684506_06687365 NA coding downstream 309023 6684506 ~ 6687405 (+)
CI01000016_06756366_06782229 SETD2 coding downstream 380883 6756366 ~ 6782619 (+)
CI01000016_06813604_06813789 NA coding downstream 438121 6809807 ~ 6814285 (+)
CI01000016_06890651_06904100 NA coding downstream 514663 6890146 ~ 6904634 (+)
G96011 NA non-coding upstream 23188 6239836 ~ 6247237 (+)
G95949 NA non-coding upstream 56792 6212978 ~ 6213633 (+)
G96096 NA non-coding upstream 151955 6081335 ~ 6118470 (+)
G96095 NA non-coding upstream 189181 6080752 ~ 6081244 (+)
G96092 NA non-coding upstream 192130 6076378 ~ 6078295 (+)
G95974 NA non-coding downstream 617 6376100 ~ 6376980 (+)
G96163 NA non-coding downstream 109094 6484577 ~ 6484776 (+)
G96236 NA non-coding downstream 315707 6691190 ~ 6691843 (+)
G95992 NA non-coding downstream 351644 6727127 ~ 6727496 (+)
G96257 NA non-coding downstream 431238 6806721 ~ 6807026 (+)
CI01000016_05405791_05407797 AICDA other upstream 862562 5405791 ~ 5407963 (+)
G95792 NA other upstream 1044484 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 1433770 4829592 ~ 4837457 (+)
G95648 NA other upstream 1996520 4272636 ~ 4273905 (+)
G95439 NA other upstream 2406568 3862175 ~ 3862305 (+)
G96389 NA other downstream 785158 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 1408582 7783987 ~ 7784996 (+)
G97824 NA other downstream 1638880 8014363 ~ 8015775 (+)
G98288 NA other downstream 2620615 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 3420148 9795950 ~ 9842576 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location