Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000016_06030950_06038330 |
| gene name | DAP3 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 6030950 ~ 6038330 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| dap3 | Predicted to be a structural constituent of ribosome. Acts upstream of or within response to hypoxia. Predicted to be located in mitochondrial ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; gill; immature eye; liver; and nervous system. Orthologous to human DAP3 (death associated protein 3). |
| id | name | namespace |
|---|---|---|
| GO:0015935 | small ribosomal subunit | cellular_component |
| id | description |
|---|---|
| K17408 | DAP3, MRPS29; small subunit ribosomal protein S29 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000016_06030950_06038330.mRNA | True | 1373 | mRNA | 0.49 | 13 | 6030950 | 6038330 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_05966893_05982233 | RUSC1 | coding | upstream | 48305 | 5964215 ~ 5982645 (+) |
| CI01000016_05960829_05963788 | FDPS, FPPS | coding | upstream | 67162 | 5960829 ~ 5963788 (+) |
| CI01000016_05956820_05958904 | NA | coding | upstream | 72033 | 5956583 ~ 5958917 (+) |
| CI01000016_05942798_05943229 | NA | coding | upstream | 87500 | 5942798 ~ 5943450 (+) |
| CI01000016_05921722_05928898 | NA | coding | upstream | 101222 | 5921193 ~ 5929728 (+) |
| CI01000016_06038939_06045122 | GBA | coding | downstream | 609 | 6038939 ~ 6045402 (+) |
| CI01000016_06058748_06068258 | POLR3C | coding | downstream | 20418 | 6058748 ~ 6068648 (+) |
| CI01000016_06158996_06159538 | NA | coding | downstream | 120392 | 6158722 ~ 6159725 (+) |
| CI01000016_06174800_06210259 | DEPDC6, DEPTOR | coding | downstream | 136470 | 6174800 ~ 6211031 (+) |
| CI01000016_06270425_06375483 | COL14A1A, COL14A1 | coding | downstream | 232095 | 6270425 ~ 6375483 (+) |
| G96087 | NA | non-coding | upstream | 34230 | 5996498 ~ 5996720 (+) |
| G95967 | NA | non-coding | upstream | 46126 | 5984065 ~ 5984824 (+) |
| G96079 | NA | non-coding | upstream | 96159 | 5930392 ~ 5934791 (+) |
| G96076 | NA | non-coding | upstream | 107966 | 5922761 ~ 5922984 (+) |
| G96092 | NA | non-coding | downstream | 38048 | 6076378 ~ 6078295 (+) |
| G96095 | NA | non-coding | downstream | 42422 | 6080752 ~ 6081244 (+) |
| G96096 | NA | non-coding | downstream | 43005 | 6081335 ~ 6118470 (+) |
| G95949 | NA | non-coding | downstream | 174648 | 6212978 ~ 6213633 (+) |
| G96011 | NA | non-coding | downstream | 201506 | 6239836 ~ 6247237 (+) |
| CI01000016_05405791_05407797 | AICDA | other | upstream | 623087 | 5405791 ~ 5407963 (+) |
| G95792 | NA | other | upstream | 805009 | 5219880 ~ 5225941 (+) |
| CI01000016_04829592_04837305 | NA | other | upstream | 1194295 | 4829592 ~ 4837457 (+) |
| G95648 | NA | other | upstream | 1757045 | 4272636 ~ 4273905 (+) |
| G95439 | NA | other | upstream | 2167093 | 3862175 ~ 3862305 (+) |
| G96389 | NA | other | downstream | 1122311 | 7160641 ~ 7161290 (+) |
| CI01000016_07784248_07784757 | TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S | other | downstream | 1745735 | 7783987 ~ 7784996 (+) |
| G97824 | NA | other | downstream | 1976033 | 8014363 ~ 8015775 (+) |
| G98288 | NA | other | downstream | 2957768 | 8996098 ~ 9002717 (+) |
| CI01000016_09796196_09842235 | NA | other | downstream | 3757301 | 9795950 ~ 9842576 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
