G95967


Basic Information

Item Value
gene id G95967
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5984065 ~ 5984824 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109149
TGTATACAGGTTTGGAACAACTTAAGGGTGAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTATCCCTTTAAAATTTAAACTTAACCTATGGGATTTATGTATCTGAGTTTGTCAGGGACAATTTACTGTTTTTAGGATGTAGTTTAGGAGGTATATTTAAAAAAATCTGAGACAGAACTCCTTGAGAAGTTAGCTTTGTAATTGGCGTGAGCTTTAATGTCCCTTTTTAAAAATGAAGAAAAATAAAATGTTATGGGTTGAGAGTTAAGCAAGGGTTCTGTAGAAAATCATATTTAGTGTCATATAGTCTTACCTCACAGGGCAAACTGCAATGATGCATGACTTTAATTCATTTTTTTTTTTTCCTTTTCATTATTATATATTTTTTTGTAGCTGTTATTTTCGTTATAACTGTGCATTTATAATTGTGACATTTGAATTACATTAGTATGTTTTGGAGAAAGAAACAGCTATGTTGCATTATAAATATAGTGTACTTATTGTTTGTTGTTAATTATACCAGTTGATCTGCTTTTTATCTGTTTCTCTTGTCTATCTATCTCTCTATCTATCACTTGCGTGTGTGTACTTTTGTGTGGTAATGAGTTGCGTAGCTCTGTGTGGTATTGCCCATCGCTGGTAGCACACTTAAAGCATAATGTTCTGTACCAACTCTTGAGTTCTGTAATTCCCTGTGAATCAGCTCTATGCATGTTGGTGTTTGTAAATATACCCAATAAAATATGAAAAGAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU109149 True 760 lncRNA 0.32 1 5984065 5984824

Neighbor

gene id symbol gene type direction distance location
CI01000016_05966893_05982233 RUSC1 coding upstream 1420 5964215 ~ 5982645 (+)
CI01000016_05960829_05963788 FDPS, FPPS coding upstream 20277 5960829 ~ 5963788 (+)
CI01000016_05956820_05958904 NA coding upstream 25148 5956583 ~ 5958917 (+)
CI01000016_05942798_05943229 NA coding upstream 40615 5942798 ~ 5943450 (+)
CI01000016_05921722_05928898 NA coding upstream 54337 5921193 ~ 5929728 (+)
CI01000016_06030950_06038330 DAP3 coding downstream 46126 6030950 ~ 6038330 (+)
CI01000016_06038939_06045122 GBA coding downstream 54115 6038939 ~ 6045402 (+)
CI01000016_06058748_06068258 POLR3C coding downstream 73924 6058748 ~ 6068648 (+)
CI01000016_06158996_06159538 NA coding downstream 173898 6158722 ~ 6159725 (+)
CI01000016_06174800_06210259 DEPDC6, DEPTOR coding downstream 189976 6174800 ~ 6211031 (+)
G96079 NA non-coding upstream 49274 5930392 ~ 5934791 (+)
G96076 NA non-coding upstream 61081 5922761 ~ 5922984 (+)
G96058 NA non-coding upstream 207755 5776060 ~ 5776310 (+)
G96048 NA non-coding upstream 227687 5756097 ~ 5756378 (+)
G96087 NA non-coding downstream 11674 5996498 ~ 5996720 (+)
G96092 NA non-coding downstream 91554 6076378 ~ 6078295 (+)
G96095 NA non-coding downstream 95928 6080752 ~ 6081244 (+)
G96096 NA non-coding downstream 96511 6081335 ~ 6118470 (+)
G95949 NA non-coding downstream 228154 6212978 ~ 6213633 (+)
CI01000016_05405791_05407797 AICDA other upstream 576202 5405791 ~ 5407963 (+)
G95792 NA other upstream 758124 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 1147410 4829592 ~ 4837457 (+)
G95648 NA other upstream 1710160 4272636 ~ 4273905 (+)
G95439 NA other upstream 2120208 3862175 ~ 3862305 (+)
G96389 NA other downstream 1175817 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 1799241 7783987 ~ 7784996 (+)
G97824 NA other downstream 2029539 8014363 ~ 8015775 (+)
G98288 NA other downstream 3011274 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 3810807 9795950 ~ 9842576 (+)

Expression


Co-expression Network