G96079


Basic Information

Item Value
gene id G96079
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5930392 ~ 5934791 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109277
GCAGTCTTCCTGGACGATAAGTCATTTTCTTTTTTTTAAATTTTTATTTATTGATTTATTTTTTGTCAACAGCCTAGAGGTTTAGTTGGCTTTCATTTGTATTTTACTTCTTTTACAAGAAAAACATTAATTATTTTGCTCTCATTTCAATTCATAAAGAAAAAAAAAGTGCTTACAGCTCAAGAGTATCGTTATAATTTCATCCGTCAGAAAGTCTACATTTTTCACACATTTCAACACATTAGTATGTTCCCAGAAGTGACACTTTACTATCAGTTTACAACCTTTAATAATAATCACTATCCTCACTCCATCTGTCACAACTCAAAATATTGCAGTTAATGGGCTTTCAGATATTGACAAAATTAATGTGCTAAAAAACAAACAAAATGAAAACAAGAAAAGGGGGAAGCACAAAAGGAAACAATATGACAATAAAAATACAATGTTATTATTCTTGTTTTATTGTTACTTTTTGGGCTCATACTGAATAAGGTGGATAGCGTCTTCGTTTTCAAGAACACCTTGAATAAACTCACCCTCAGCCAGTCGTTCATTTTCTTTTTTATCGAAGTACGACCACAGTTTGTCTGCTCTCTTCTCAGGAGTGTTCTCGTCTGCTGGAAGATTCTCTTGGTCCTCTTTGGGGATCAGCTTAAAGATAGCCTGGCAGATTTCTGTCACTTCTGCCTTGGTGATGTATCCGTTCTTGTCAACATCGAAGAGTGAAAAGGCCCACTCCAGCTTCCGCTCCGTCTTTCCAGTTGATGTCATATGTAGAGCGATAATGTATTCCTTGAAATCCAATGTTCCATCATCGTTCGTGTCAAAGGAGCGGAAGACGTGTTGGGCGTATGATGTGGCGTCACTTTCTGGGAAAAAGCGTTCGTAGATCTTTTTAAACTCTTCTGGTGTGATACGGCCGGACGGGCACTGCTTCTTGAAGTTCTCGTACCACTGTGCCAGTTCATCCTCTGTGAATTTGGTATTGAGTTTGAGATCCTCCAGGATCTCCTTGGACATAGCACTGCTTTTGGCATTCCCCATTTTTGGCTGCTGTTGGAGGGCACAGTCAGGGGTTCAAGAAGTGTTGTTTGTCAGGTCCTCCTTTCACAACCAGAGACACACTCTACTTTGTAGCTGCTCTTGTTGAAATGTTCCCAGATAATCTCTTCTGCCTGTAATTAATGTCCCATAAAAATCTTGGTGCTCAGTTCTCCTTTGAAAATGGTGGATTGATAGATGCTACTCCAAAGAGTTAGCAGAGGAAAGAACAACGTCCGTTGTAATGAAGCTCTCAAATGTACAGGGAGGAATGACAGCCGTTTGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU109277 True 1331 lncRNA 0.39 3 5930392 5934791

Neighbor

gene id symbol gene type direction distance location
CI01000016_05921722_05928898 NA coding upstream 664 5921193 ~ 5929728 (+)
CI01000016_05914765_05917918 ATG12 coding upstream 12340 5914067 ~ 5918052 (+)
CI01000016_05894658_05908090 GRWD1 coding upstream 21853 5894658 ~ 5908539 (+)
CI01000016_05891870_05892528 NA coding upstream 37713 5891870 ~ 5892679 (+)
CI01000016_05878037_05885761 FLCN coding upstream 44200 5878037 ~ 5886192 (+)
CI01000016_05942798_05943229 NA coding downstream 8007 5942798 ~ 5943450 (+)
CI01000016_05956820_05958904 NA coding downstream 21792 5956583 ~ 5958917 (+)
CI01000016_05960829_05963788 FDPS, FPPS coding downstream 26038 5960829 ~ 5963788 (+)
CI01000016_05966893_05982233 RUSC1 coding downstream 29424 5964215 ~ 5982645 (+)
CI01000016_06030950_06038330 DAP3 coding downstream 96159 6030950 ~ 6038330 (+)
G96076 NA non-coding upstream 7408 5922761 ~ 5922984 (+)
G96058 NA non-coding upstream 154082 5776060 ~ 5776310 (+)
G96048 NA non-coding upstream 174014 5756097 ~ 5756378 (+)
G96047 NA non-coding upstream 174498 5755638 ~ 5755894 (+)
G96035 NA non-coding upstream 197929 5732257 ~ 5732463 (+)
G95967 NA non-coding downstream 49274 5984065 ~ 5984824 (+)
G96087 NA non-coding downstream 61707 5996498 ~ 5996720 (+)
G96092 NA non-coding downstream 141587 6076378 ~ 6078295 (+)
G96095 NA non-coding downstream 145961 6080752 ~ 6081244 (+)
G96096 NA non-coding downstream 146544 6081335 ~ 6118470 (+)
CI01000016_05405791_05407797 AICDA other upstream 522529 5405791 ~ 5407963 (+)
G95792 NA other upstream 704451 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 1093737 4829592 ~ 4837457 (+)
G95648 NA other upstream 1656487 4272636 ~ 4273905 (+)
G95439 NA other upstream 2066535 3862175 ~ 3862305 (+)
G96389 NA other downstream 1225850 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 1849274 7783987 ~ 7784996 (+)
G97824 NA other downstream 2079572 8014363 ~ 8015775 (+)
G98288 NA other downstream 3061307 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 3860840 9795950 ~ 9842576 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010533 rcvrn2 coding NC_007127.7 CM002900.2 13911692 ~ 13921589 (-)