CI01000016_05960829_05963788 (FDPS, FPPS)


Basic Information

Item Value
gene id CI01000016_05960829_05963788
gene name FDPS, FPPS
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5960829 ~ 5963788 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05960829_05963788.mRNA
GGTGACAGCAGGTGCTGTAACGGTGTCCAGCAGAAAGGAAAGATGTTGTCTGATGCTCAGCTCTTTGATGGGGCGTTTGAAAAGCTGGTGTCTGAACTTACTGAGCAGGATTTCACTGATCCAGTTCTCACTGATGCCCTTAACAGACTCAGAGAGGTGCTTCGGTACAATGCCCCTGGAGGCAAGAGAAACCGGGGATTGTCTGTGATTGGTTCTTTACGGGAGTTGGTCTCTCCCTCTGAACTGCCACCTGATGAAGTTCACAGAGCCCTTTTGGTTGGATGGTGCATTGAACTGCTTCAGGCATTTTTCTTGGTGGCTGATGACATCATGGATGCATCCGTGACAAGAAGGGGTCAACCCTGTTGGTATAAGAAGGAAGGTATTGGTCTGGATGCCATTAATGACGCTTTCCTCCTGGAGGGGGCGATCTACCGCCTTCTTCGCAGACATTGCAGAGGACAGCACTACTATGTCCATCTGCTTGAGCTTTTTACTGAGACAGAGCTGGGTCAAGCTCTAGATCTGATGACTGCACCTCCACACAAAATCGACCTTGATCGCTTTACTATGGAGAGGTACAGAGCCATTGTAAAATACAAGACCGCATTCTACTCTTTTTATCTCCCTGTGGCTGCAGCCATGTACATGGCAGGGATTGAGAATGAGACTGAACACAACAATGCCAAAACAATTTTACTTGAGATGGGAGAGTTCTTTCAGATACAGGATGACTACCTGGATTGCTATGGTGATCCTGCAGTAACTGGAAAGATCGGCACAGATATACAGGACAACAAATGCAGCTGGCTGGTGGTGACCGCACTGGGCATCATGACACCTCAACAAAGGGCAGAACTAGAGGCATGCTATGGGCGTAGTGATGCTGAAAGTGTTGAAAGGGTCAAGGCTTTGTATGATACTCTGGAAATGCCTGTTCGATACTATCAACATGAGGAGGAGAGCTATCACCGCCTTCAAAAACTCATCCAGCTTCATGCCAAGAATCTGCCTCATGCTGTTTTTCTTAATTTTGCCAAGAAAATATATAAGAGAAACAAATGA

Function

symbol description
fdps Predicted to enable dimethylallyltranstransferase activity and geranyltranstransferase activity. Predicted to be involved in farnesyl diphosphate biosynthetic process. Predicted to act upstream of or within isoprenoid biosynthetic process. Predicted to be active in cytoplasm. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human FDPS (farnesyl diphosphate synthase).
fpps Predicted to enable dimethylallyltranstransferase activity and geranyltranstransferase activity. Involved in germ cell migration. Predicted to be active in cytoplasm. Is expressed in adult head and organism. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human FDPS (farnesyl diphosphate synthase).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K00787 FDPS; farnesyl diphosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05960829_05963788.mRNA True 1065 mRNA 0.47 9 5960829 5963788

Neighbor

gene id symbol gene type direction distance location
CI01000016_05956820_05958904 NA coding upstream 1912 5956583 ~ 5958917 (+)
CI01000016_05942798_05943229 NA coding upstream 17379 5942798 ~ 5943450 (+)
CI01000016_05921722_05928898 NA coding upstream 31101 5921193 ~ 5929728 (+)
CI01000016_05914765_05917918 ATG12 coding upstream 42777 5914067 ~ 5918052 (+)
CI01000016_05894658_05908090 GRWD1 coding upstream 52290 5894658 ~ 5908539 (+)
CI01000016_05966893_05982233 RUSC1 coding downstream 427 5964215 ~ 5982645 (+)
CI01000016_06030950_06038330 DAP3 coding downstream 67162 6030950 ~ 6038330 (+)
CI01000016_06038939_06045122 GBA coding downstream 75151 6038939 ~ 6045402 (+)
CI01000016_06058748_06068258 POLR3C coding downstream 94960 6058748 ~ 6068648 (+)
CI01000016_06158996_06159538 NA coding downstream 194934 6158722 ~ 6159725 (+)
G96079 NA non-coding upstream 26038 5930392 ~ 5934791 (+)
G96076 NA non-coding upstream 37845 5922761 ~ 5922984 (+)
G96058 NA non-coding upstream 184519 5776060 ~ 5776310 (+)
G96048 NA non-coding upstream 204451 5756097 ~ 5756378 (+)
G96047 NA non-coding upstream 204935 5755638 ~ 5755894 (+)
G95967 NA non-coding downstream 20277 5984065 ~ 5984824 (+)
G96087 NA non-coding downstream 32710 5996498 ~ 5996720 (+)
G96092 NA non-coding downstream 112590 6076378 ~ 6078295 (+)
G96095 NA non-coding downstream 116964 6080752 ~ 6081244 (+)
G96096 NA non-coding downstream 117547 6081335 ~ 6118470 (+)
CI01000016_05405791_05407797 AICDA other upstream 552966 5405791 ~ 5407963 (+)
G95792 NA other upstream 734888 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 1124174 4829592 ~ 4837457 (+)
G95648 NA other upstream 1686924 4272636 ~ 4273905 (+)
G95439 NA other upstream 2096972 3862175 ~ 3862305 (+)
G96389 NA other downstream 1196853 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 1820277 7783987 ~ 7784996 (+)
G97824 NA other downstream 2050575 8014363 ~ 8015775 (+)
G98288 NA other downstream 3032310 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 3831843 9795950 ~ 9842576 (+)

Expression


Co-expression Network