CI01000016_05921722_05928898


Basic Information

Item Value
gene id CI01000016_05921722_05928898
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5921193 ~ 5929728 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05921722_05928898.mRNA
ATATAAAATACTCAGATATTTTGAAAATTTCTAATAAAGCAGTTTTATGACATGAAGCATTTGGTGATAGAAAAATAATAAAGTAAATATAAAAATATCAAACAAATAAAAAATCTGTTAGCTAACAAACTTAAAATAATAATCCATATAATAATGATATACTAATGCCAAACCATATGAACACATATAGTGGTCCAGAAGTAAAATGTATCTGTGTAGTTAATGTAAACTGTCTTTTAGATCTCTTAAAGGACTTTTTCGTTTGTTGCTTTGGTTAATAAACATCTACCAAGAACAAAGTTTAAATGTATAAGCCTGTGACATGTGTTTTTCTTTCCTTATTTGACCCTCTCCTTTAATAAATCCACATCTTCATTTACCCTACCATCTGTCATAGGGATCTTTTTCTCATTTCTGCTTTATATAATTTTCTCAATTTCATTCTCATCCCAAAAGACTTTTTGTGCGTGGTCACTGACATCCCTGTTTATCCTTCTGTTTCTTACCCCTGGGTAGCATGTTGGACCACATGTCCAGGCGTTCTCGCTCGCTGCTCTCTCTTTTCCTGACCTCCCTTGCCCTTGCTTTATCTGTGCTGGCTTTCTGTACGTCTTACTGGTGTGAAGGAACGCACAAGGTGGTCAAACCTCTCTGCCTTTCACCTGTCAAGATGAAGAACTGCGGCCAGAACAATAGTGAGCCTTATACTACAGAAAGCCCCACCCCAGATCCACGGGGCACATTATCACCAAAGCGAAGGGAGGAACTTGCCAGGATTCGTCAAAGACAATTGGCCAATGCAGTTCACTATATTTGGGAGACGGGAGAAGACAAGTACACCTTCAGATATTTCCACACAGGATTTTGGGAGTCTTGTGAAAAACATGCTGATGGAGAACGATGTCGCCGGTTCTTAGATCTTACTCCTGGAGAGACTCATGGTGTTCTGTGGTTGTCAATGATTGCTGAGTTCATGTACATCAGTTTGCTGGGGATGGGGTTTCTACTCATGTGGGTGGAGGTGTTGTGTGCTCATAAAGAAATGCATGCGCTCAAAATCAACGCTTTTGCAGCCATGTGCACTGTGCTCTCAGGACTGTTAGGGATGGTGGCTCACATGATGTACACCACCGTATTTCAGCTGACTGTGATTGTGGGGCCCAAAGACTGGAGACCTCAGACGTGGGACTACGGCTGGTCATTTGCCTGCTGCATGGGTGCTGCAGTTATGACCCTTAATTCTTACACCAAAACAGTCATTGAGATGCGTCACCGCCAGAGGCTTCGATTAGAAGAGGCCCGCGCTACAAGCCACGCTCCATCCTACGATGAGGTGGTTCCAGGGGGCGGGCTCTACTCCGTCAGTGGCCTATTACAGTGCCCAAATGGCATGATAGACTCTATGTGGGCACCCAATGGGAGCATGAGAATGGTGCAAGAGGAGGATGTGCCCACCCTGGTACTGGTTGGGGGGTGCAGACCGGATACGTGTGAGGACTGCGAGAGAGAGATAGATGAGATGAAGGAGGCCATGAAAGGAATAGATTCTCCTTGCTAAATTGGATGATGTGAGTTGAGAAGAGATTCAGCCAAAAATGAAAAATCTGACTTCATTTACTCAACCTCATGTCGTTCCAAACCTTAATGAACCTGCGGAACACAAAAGAAGGTATTTTGAAGAATGTTGGTAACAGTTTTGGTTACAATTGACTATATGGACTGTGCAACATGTCTTAAAATATCTACTTTTTTGCTCCGCAACAGAAAGAATACAGTAATGCGGGTAAATGATGTCAGAATTTTCATTTTTGGGTGAACTATCCCTTTAATGAGTTTTTACAACAAAGGCCTTGTATGTTTTGTTTGCCTGATTGACTGACTAAAAATCGTCTATGCAAAATGTCTGTAGATGATTTTTTCAGGTATGTGTGCGGCTGAAATTCAGTCAGTATGAGTGAGAGATGTAGACACACGGCAGGTGTGAGAAAGGAGTCCCCCTCTGTGTGTAAATCATGGAATTCCATGTGAGGATTCTGGAAAATTTCATTTATATATTGAAAGGTATGAGACTCTTGAGTGGATTACACTGAGATTGTGTCAGATCACGAAGCCTGTATTATTTTCAGTTATGCATCCCATCTGTTATATTTTAAACAAAAAGGTTTTCTGTTCTAGCTCATCTTTTCTGCTATATATATGTTATTTAATAACTCTGTTGCTCAGAAAAGCATCTGGTACCATAGCTAATGTACAGACTTGCTTAAAAGAACATTATTACCAACAAAATCTAAAATGCTTGAAACTAAATGTGAGAATTGTTGCATGATGTGATTATTTGTGTCAGGGGGTTTTCTACTACTTCTGAGAGTAGAGCAGGGTAATACTATA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05921722_05928898.mRNA False 2388 mRNA 0.41 6 5921193 5929728

Neighbor

gene id symbol gene type direction distance location
CI01000016_05914765_05917918 ATG12 coding upstream 3141 5914067 ~ 5918052 (+)
CI01000016_05894658_05908090 GRWD1 coding upstream 12654 5894658 ~ 5908539 (+)
CI01000016_05891870_05892528 NA coding upstream 28514 5891870 ~ 5892679 (+)
CI01000016_05878037_05885761 FLCN coding upstream 35001 5878037 ~ 5886192 (+)
CI01000016_05837368_05837667 NA coding upstream 83266 5836583 ~ 5837927 (+)
CI01000016_05942798_05943229 NA coding downstream 13070 5942798 ~ 5943450 (+)
CI01000016_05956820_05958904 NA coding downstream 26855 5956583 ~ 5958917 (+)
CI01000016_05960829_05963788 FDPS, FPPS coding downstream 31101 5960829 ~ 5963788 (+)
CI01000016_05966893_05982233 RUSC1 coding downstream 34487 5964215 ~ 5982645 (+)
CI01000016_06030950_06038330 DAP3 coding downstream 101222 6030950 ~ 6038330 (+)
G96058 NA non-coding upstream 144883 5776060 ~ 5776310 (+)
G96048 NA non-coding upstream 164815 5756097 ~ 5756378 (+)
G96047 NA non-coding upstream 165299 5755638 ~ 5755894 (+)
G96035 NA non-coding upstream 188730 5732257 ~ 5732463 (+)
G96034 NA non-coding upstream 194118 5726845 ~ 5727075 (+)
G96079 NA non-coding downstream 664 5930392 ~ 5934791 (+)
G95967 NA non-coding downstream 54337 5984065 ~ 5984824 (+)
G96087 NA non-coding downstream 66770 5996498 ~ 5996720 (+)
G96092 NA non-coding downstream 146650 6076378 ~ 6078295 (+)
G96095 NA non-coding downstream 151024 6080752 ~ 6081244 (+)
CI01000016_05405791_05407797 AICDA other upstream 513330 5405791 ~ 5407963 (+)
G95792 NA other upstream 695252 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 1084538 4829592 ~ 4837457 (+)
G95648 NA other upstream 1647288 4272636 ~ 4273905 (+)
G95439 NA other upstream 2057336 3862175 ~ 3862305 (+)
G96389 NA other downstream 1230913 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 1854337 7783987 ~ 7784996 (+)
G97824 NA other downstream 2084635 8014363 ~ 8015775 (+)
G98288 NA other downstream 3066370 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 3865903 9795950 ~ 9842576 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location