CI01000016_05878037_05885761 (FLCN)


Basic Information

Item Value
gene id CI01000016_05878037_05885761
gene name FLCN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5878037 ~ 5886192 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05878037_05885761.mRNA
TTTACGGGCAGTACCAGTCGGCGCAATTGCTCTACCCATCTGATAAAGATGAATGCTTTAGTCGCCCTTTGCCACTTCTGTGAGCTCCATGGCCCTCGGACGCTATTCTGTACAGAGGCCGTCCACCCTCCGTCCCCATCTCCTCCGCAGCCTGGTTCAGCCATTCCTGGTGACAGGGACCGAGAGGGGGACAGAGAGGGCGAAGGGCTCACCATGAGAGCCAACAGCTCTGCCACACAAAGAGCAGACATGTGTGAAGGCTGTCGCTCCCTACCTGCATCTCACCCAGGCTTTGTGAGTGTGGACAGTGAGACAGGAATCCGCTATTTGAGCCATCAACATCCACGCCAGCCACAGCTTTTCAGTGTGGTGAGACAAGCATGTGTGCGCAGCCTCAGCTGCGAGGTTTGTCCTGGTCGGGAGGGGCCCATCTTCTTTGGAGATGAACAGCATGGATTCGTTTTTTCTCATACGTTTTTCATCAAAGACAGCCTGGCACGGGGTTTCCAGCGCTGGTACAGCATTGTCGTGGTAGCTATGGACAGGATCTACCTCATCAACTCCTGGCCTTTCCTGTTGCGCCACCTGCGGCTAACCATTCAGAGTCTACAGAACACAGCACTCAAGGTGTTTGACAGCGAGCAGGGTGTGTGTCCTCAGAGGGCTGTGCGTATGAACAGTGCCTTCTCTCCGGCAGTGTTCCCCCATCAGCGCAGTGGCAATGCAGCCCGCTCACTCACATCTCTAACCCAGCACCAAAACCTGTGGGCTAGTCTGCACTCCTCATTCAGCTGGTTGCTGAAAGCTTGTGGCAGTCGGTTGACTGAGAAGCTTTTAGAGGGAGCTCCCACAGAAGACACACTTGTTCTCATTGAAAGACAAACTGAGCAAGAGGAAGAGATGAGTGCCTGGGATGGTGCTGAAGGAGGCGGCTCTAACTCACAGCCCAGTCAATCAGAGAGTGTACAGGCGAAAGACTTTCAATTTGATGATGGAAGACAAGAGGACCTCATTGGGCCGAAGCTTTGCTTCCCGTTGGCTGTGTCCGAGCAGTTCCGTACAGTCCTCACTATGAGGAAGCATATCGATGTAACTTCCTTGGCCTTAGCCCAGATGTACCAATCCCAGCCCATGTCAGCTCTTCAGTTTTCAGTGCTGGTGGATGTACTTAACGTTGAGCGCGGTTGTGTAAATCCTGTTTCGGATGATGACATTCTCTCACTTTACCAGTTCAACATTAGCAGTGCCAACACGCAACCAACGGATAAAGGTCCAACTCTGTTGAATAAGATTGAAGTGGCTCTTTCTAATGAGAATCTGTCGGTGGAGGTGGTCTCTCTCTGCCTGCTCTGTCTGAAAGAGGAGTGGATGAACAAAGTAAAAGTGTTGTTTAAGTTCTCCAAGGTGGATGGCAGAGGTAAAGAGGACACTCAGAAGGTTTTAACCCTGCTGGGGGCCACGGGGCCCGGAGAAGAGGACAATGTGCGTCTTCTTAAGTTTTGGATGACAGGACTCAGCAAGCTCTACAAGAGCCATCTGATGACAGCAGTCAGAGGTGGAGAGAGAACTCTGAGCCAGTGAGAAAGAGAGAGCGAGAGGAAGGGGACAATAGACTCATTGCTAAAGTTAGATGAAAAGAATGTGTGGGTGCGTTTTACGGGAAAAGGGGGTCAAGCCTGAGAATGTGTTTTTCTGCATGGTACAGAGAGAAAGTAAAAGCTATCATTGTGATTGAAGCCTCAAAAACTTTTACTTAGACATGTGCATTTAAATGGAATGTTGTTTTACCGTCATGACTAGACACGTCCATTTTCTGTCTTTTTCACTATGTCTAAAATTGCATATGGTCCACTGACTTCATGGGAACTAGGCAGAGTATCAATTGACATGATACTGTTTTGTGCCCTTTATAATTCACGTCATCGTCACATATCTCTGTTCATCTGACTTGTCTAAGAGAAAATTTGTTTAATTAGCAGTTTTATTTATCCTTATTTGTTAACTTATTTTAA

Function

symbol description
flcn Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; positive regulation of GTPase activity; and positive regulation of signal transduction. Predicted to be located in several cellular components, including cilium; lysosomal membrane; and microtubule cytoskeleton. Predicted to be active in cytosol. Is expressed in brain; hatching gland; pectoral fin bud; retina; and tail bud. Used to study Birt-Hogg-Dube syndrome. Human ortholog(s) of this gene implicated in Birt-Hogg-Dube syndrome; colorectal cancer; primary spontaneous pneumothorax; and renal cell carcinoma. Orthologous to human FLCN (folliculin).

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG:

id description
K09594 FLCN, BHD; folliculin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05878037_05885761.mRNA True 2012 mRNA 0.49 11 5878037 5886192

Neighbor

gene id symbol gene type direction distance location
CI01000016_05837368_05837667 NA coding upstream 40110 5836583 ~ 5837927 (+)
CI01000016_05828974_05833309 JOSD2, JOS2 coding upstream 44660 5828398 ~ 5833377 (+)
CI01000016_05797506_05798075 NA coding upstream 78452 5797506 ~ 5799585 (+)
CI01000016_05698858_05706081 NA coding upstream 171318 5698858 ~ 5706719 (+)
CI01000016_05488887_05502270 CACNG6B coding upstream 375687 5484205 ~ 5504239 (+)
CI01000016_05891870_05892528 NA coding downstream 5678 5891870 ~ 5892679 (+)
CI01000016_05894658_05908090 GRWD1 coding downstream 8466 5894658 ~ 5908539 (+)
CI01000016_05914765_05917918 ATG12 coding downstream 27875 5914067 ~ 5918052 (+)
CI01000016_05921722_05928898 NA coding downstream 35001 5921193 ~ 5929728 (+)
CI01000016_05942798_05943229 NA coding downstream 56606 5942798 ~ 5943450 (+)
G96058 NA non-coding upstream 101727 5776060 ~ 5776310 (+)
G96048 NA non-coding upstream 121659 5756097 ~ 5756378 (+)
G96047 NA non-coding upstream 122143 5755638 ~ 5755894 (+)
G96035 NA non-coding upstream 145574 5732257 ~ 5732463 (+)
G96034 NA non-coding upstream 150962 5726845 ~ 5727075 (+)
G96076 NA non-coding downstream 36569 5922761 ~ 5922984 (+)
G96079 NA non-coding downstream 44200 5930392 ~ 5934791 (+)
G95967 NA non-coding downstream 97873 5984065 ~ 5984824 (+)
G96087 NA non-coding downstream 110306 5996498 ~ 5996720 (+)
CI01000016_05405791_05407797 AICDA other upstream 470174 5405791 ~ 5407963 (+)
G95792 NA other upstream 652096 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 1041382 4829592 ~ 4837457 (+)
G95648 NA other upstream 1604132 4272636 ~ 4273905 (+)
G95439 NA other upstream 2014180 3862175 ~ 3862305 (+)
G96389 NA other downstream 1274449 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 1897873 7783987 ~ 7784996 (+)
G97824 NA other downstream 2128171 8014363 ~ 8015775 (+)
G98288 NA other downstream 3109906 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 3909439 9795950 ~ 9842576 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location