CI01000016_09240403_09243601


Basic Information

Item Value
gene id CI01000016_09240403_09243601
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9239745 ~ 9243601 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09240403_09243601.mRNA
TTATAAAAGACAAACAGCATTTCTGTACCCTTATTCTGTTCCTCTCTCTCTGCACAAACTTGTTTGTTGAACGCCGCGCCTCTCGACCAAACATTGTGCATCAGATGCAGGTAAACAACTACTAAATGTAAAATTACAAAAAAGTAGATTCCAGCAGTGCGAAAGTACGGGAACCACGGGTTGTTGTGGCAACAGACACACACAGGATGTTGTAACACTTCATCCCACCAATCAGACGTATGAATTACTGTCACGTGGTTATAATGACACGCTTTTTCACTCCGCGTGCTTGAACTAGCCAATCATCGATGACGTCTGTGATTCTGAATGTCACACTTTTCACCGGCTGATCTTGTATTTCCACCTTAAAGTTGGCTGTCGTTTTTATATAATGTTCAATGTCCGTTAACTAATTGATAAAGACTTTATTTCTTTTTTCAGTTTATTGCTTCAAAAGGGCTAAGCGGCTAACGCTTGTGTGCAGTTTCTGTTGAAATCTGGGCGGTGGAAATGCCTTCAGTTTATTACATCATTTACAACAAAGTCATGTTCATTTGTTGTAGCAATTAAATATTTAGGCTTTTATCCTGTCTAGAAGAATAAGACATCTTCTATATTTGTTTTGGAGTGACAGCCACTACATTCCTCCACAGTCAACATGTTCGGACAGATAGCGAGAAGACTTGGTCACCTCCACGGCCAGCAGATCTCTAATGGACTGAACGGAATCAGTTTTAACCAGCTGCTCTCTAAAGAGACACACCGGCACCTGCAGTCCTCATTCAAGACCATCAGGCCTATCTCGACGATTCCTCTGTGGCCGTTCTCTTCTCGTCCGCGGGACTTCAGCCAGCCCAACTCATCGTGGAGTCCAGAGATGCGCAAGGCTTACGATCATTTTAATGCGCTCTGTGACACTGACAATGAAAATGGCGAGAAAACAAGGGGGCCTTGGAGGAGGTTGCCCAGCTACAACCGCTCCATTAAATATGCTACTGGCGGCATCCACCTCAGCAAATTCATCCAGGCCGAAAATCGACTTTTCACAAGAAGTGTTAAAGAGCAAGGCGCAACGTTTGAATATGTGGTGTTTGTCAATAAGGAGGAGAAGAGCTGCGTTTGTGTGTTTCAGTCAGGACGTTTACTAGAGGGGGCACCTGGGCATGTCCACGGTGGAGCCATAGCCACCATGATTGACACGGTGACAGGTACTCTTGCTGGTTACCTGTCAGGACCCGTTATGACTGCCAATCTCAGCATCGACTACCGCAGTCCAATGCCTCTGGGTAGTGTGGTTTTAATCCACAGCGCTCTGGATCGAATAGAGAGGAGGAAAACATTCATCACTTGCAAAGTGACCAGCACTGATGAGTCCAAACTCTACACTGAGGCCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09240403_09243601.mRNA True 1397 mRNA 0.45 5 9239745 9243601

Neighbor

gene id symbol gene type direction distance location
CI01000016_09228083_09231481 NA coding upstream 8110 9228083 ~ 9231635 (+)
CI01000016_09183871_09184200 TMEM238 coding upstream 55318 9183376 ~ 9184427 (+)
CI01000016_09181426_09182326 NA coding upstream 57419 9181426 ~ 9182326 (+)
CI01000016_09138227_09156795 NA coding upstream 82273 9137434 ~ 9157472 (+)
CI01000016_09026732_09050431 NA coding upstream 188907 9026732 ~ 9050838 (+)
CI01000016_09259876_09260073 NA coding downstream 16040 9259641 ~ 9260201 (+)
CI01000016_09266373_09278553 NA coding downstream 21964 9265565 ~ 9279131 (+)
CI01000016_09299769_09306497 RORC coding downstream 56168 9299769 ~ 9307385 (+)
CI01000016_09317824_09332379 NA coding downstream 74121 9317722 ~ 9332714 (+)
CI01000016_09340494_09349036 PIP5K1A, PIP5K1AB coding downstream 96893 9340494 ~ 9349036 (+)
G98280 NA non-coding upstream 12837 9224449 ~ 9226908 (+)
G98392 NA non-coding upstream 27979 9211350 ~ 9211766 (+)
G98391 NA non-coding upstream 63785 9175199 ~ 9175960 (+)
G98385 NA non-coding upstream 113814 9125719 ~ 9125931 (+)
G98375 NA non-coding upstream 141642 9085228 ~ 9098103 (+)
G98290 NA non-coding downstream 82773 9326374 ~ 9375553 (+)
G98271 NA non-coding downstream 132616 9376217 ~ 9378050 (+)
G98409 NA non-coding downstream 156354 9399955 ~ 9402046 (+)
G98414 NA non-coding downstream 160266 9403867 ~ 9404218 (+)
G98415 NA non-coding downstream 160766 9404367 ~ 9404679 (+)
G98288 NA other upstream 237028 8996098 ~ 9002717 (+)
G97824 NA other upstream 1223970 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1454022 7783987 ~ 7784996 (+)
G96389 NA other upstream 2078455 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3831882 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 552030 9795950 ~ 9842576 (+)
G99041 NA other downstream 680817 9924418 ~ 9925654 (+)
G99410 NA other downstream 990799 10234400 ~ 10236851 (+)
G99456 NA other downstream 1050790 10294391 ~ 10298904 (+)
G99940 NA other downstream 2428044 11671645 ~ 11672873 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location