CI01000016_09317824_09332379


Basic Information

Item Value
gene id CI01000016_09317824_09332379
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9317722 ~ 9332714 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09317824_09332379.mRNA
CTTTAAAAGCACAAGAGCGAAACGGGACGACACAGTGGGCTTCGCATCTGTAAAGCATTAACTTCAACCGAGAAGTATTTGACTGAGGGCACATCACCGACCATGAGCTCTTCACGCGGCGTGGGACTTTATTTGACGCTTTTACTTGCTCTTCTGTGCGATGCATCGGAAGACTCTCCCCCGGCTGTCCAAAGGGAAGTTACTGATATGGTGGTTGATGAAGATTTCCTTCAGAGAGAGCTTTCCCCTGAGGCTGCAGACTCAGACATGACCCAGAGAGAAGACACAAACTTTCACCCTGGCCATGTCCCAATAGGTCGCCCAGTGTTTGGCCCTCGCTCCATGGGAACCACAACGCGACCAAAGGTTGATTTCCCCCCAGCCTTTCCAAATGCAGGCAGCCTGCAAGATATCTGTCAGTTCAGTAAAGCTCCGATCAGGTACCAAAAGGACACCTTTCCTCAAAGTGGCTTTGGCCGTGAGCATCGACAGGCTGATGCTGTCAATCAACTCCAGTCCTGGTACAGCGTCTGCTGTGGCATTAATGGAACACAGGAAGAGCAAATCTGTTGTGCTGAACAAGCGTGGAAGAAGAGTCTGTCTGCCTACTGTGATGAGGAATTCTCTATTAAGACTAGTCACTACTTCTGCTGCATGAAGAACGGGAAGGCCAGATGGAGCTGTTTTGATAAGGAGGCTTCAGACACTTCATATCACGTCTCCTCCGAGGTCTCAAATGCCAAAACTCCAAAAAAGATCAGAGGCTTCAAATTTAACTCCCGCGCTTGCAAAGGCTCAGTGGTGGCTTCTCCAAGAGCACCTCGGAAGCAGCCTAAAGTTCCACACTTCAACTTTCCACCTGGCCGTCCCGATTCCTCCAACATAGAGCAAATCTGCACTCATCACAAGATCCGACCACGATACGATACCAAGTGTCTTCCTTGCACTGGCTATGGCTGGCTGGTCCGTCAATCAAAGGCCATCAATGTCCTGGAGAGAGAATATAACCAATGCTGTAAGGAGAAAAAGGGTCAACAACACTGTGCTGAAAAAAAGCTTGACAGCCACCTGAATGATATGTGCAAATCGAAGGAGCTGGTGAAGCCTCATTGTTGTGAACCCACAATCAAACACCGTGTCAAATGTGCTACAAAACTGCTCCTGCGTTATATTGGCAAGGCAAATAAAGCCATGTATACTGGGAGGAAGAAATGCCCCCTCATCATTCAGTTTGCATTGTGTGACGTGCCCACTTTCTTAAAGAATTTCTGATACCATGAATGTGAATCAGTTTATGCAGAGGGCACACATTTCAGTATATGTACGCTTGAGTTGAACCAAACCTGAACCACTTTTTGTTTATTTCTTTTAATATGCATATTCTATTTCTTTATGCAGTTTTCTTGCCAAAGGTTTTGTATTGATTATTGAGAGACATTTTTCAGACTTTATCATAAAAGAAGAACTGCTTGGATAGTATAAAATATTGAAACTTGTTTCCCAAAAATATAACAAATTATATATAAACAAAATGTCTGTTGTTATTTATTTTTTTATTTTTTTTTAAATCTTCAGTTACTGTACATCATTTACGTTTCCACAGGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09317824_09332379.mRNA True 1607 mRNA 0.44 8 9317722 9332714

Neighbor

gene id symbol gene type direction distance location
CI01000016_09299769_09306497 RORC coding upstream 10337 9299769 ~ 9307385 (+)
CI01000016_09266373_09278553 NA coding upstream 38591 9265565 ~ 9279131 (+)
CI01000016_09259876_09260073 NA coding upstream 57521 9259641 ~ 9260201 (+)
CI01000016_09240403_09243601 NA coding upstream 74121 9239745 ~ 9243601 (+)
CI01000016_09228083_09231481 NA coding upstream 86087 9228083 ~ 9231635 (+)
CI01000016_09340494_09349036 PIP5K1A, PIP5K1AB coding downstream 7780 9340494 ~ 9349036 (+)
CI01000016_09357617_09361063 PSMD4B, PSMD4, PSMD4A coding downstream 24903 9357617 ~ 9361063 (+)
CI01000016_09363759_09363932 NA coding downstream 31045 9363759 ~ 9364373 (+)
CI01000016_09364728_09366356 VAMP1 coding downstream 31935 9364649 ~ 9366356 (+)
CI01000016_09524279_09527107 NA coding downstream 190903 9523617 ~ 9527207 (+)
G98280 NA non-coding upstream 90814 9224449 ~ 9226908 (+)
G98392 NA non-coding upstream 105956 9211350 ~ 9211766 (+)
G98391 NA non-coding upstream 141762 9175199 ~ 9175960 (+)
G98385 NA non-coding upstream 191791 9125719 ~ 9125931 (+)
G98375 NA non-coding upstream 219619 9085228 ~ 9098103 (+)
G98271 NA non-coding downstream 43503 9376217 ~ 9378050 (+)
G98409 NA non-coding downstream 67241 9399955 ~ 9402046 (+)
G98414 NA non-coding downstream 71153 9403867 ~ 9404218 (+)
G98415 NA non-coding downstream 71653 9404367 ~ 9404679 (+)
G98416 NA non-coding downstream 72304 9405018 ~ 9405471 (+)
G98288 NA other upstream 315005 8996098 ~ 9002717 (+)
G97824 NA other upstream 1301947 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1531999 7783987 ~ 7784996 (+)
G96389 NA other upstream 2156432 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3909859 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 462917 9795950 ~ 9842576 (+)
G99041 NA other downstream 591704 9924418 ~ 9925654 (+)
G99410 NA other downstream 901686 10234400 ~ 10236851 (+)
G99456 NA other downstream 961677 10294391 ~ 10298904 (+)
G99940 NA other downstream 2338931 11671645 ~ 11672873 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location