CI01000016_10881609_10887779


Basic Information

Item Value
gene id CI01000016_10881609_10887779
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10881461 ~ 10887897 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_10881609_10887779.mRNA
TTATAAAAACAGAGGTTAGAAAAGAGCTTACTTTCATCTGGAGAAGTGCATTCTTGTTCACTTACTCTTTTGTGTTTCTGTCTCATTCTCTTTCTTTTCTCTCTAATTACACTTAGTTTAATCACTCCCCTGGTTATGATTAATTAAAATGAGGTTTCTATTAAAATGGATGCAGGCCAGAGGACAACTAAAATTTAATGTGAACTTCAGAATTCACAGGCTTCATCTCATGCAGTACAGGCAAAAACCAAATGAGAGCATCGACTTTGTGACTAGAGCCAGAACTTTAGCACTGAAATATCAGTTCACTGATGATGAGCTAATTGAACGTTTAGTTGAACTTATCATTGCCGGTACTCCTTTCGATGGTTTAAGAAACGACCTGTACAGCAAGCCTAAAGGTCACCCCATTGCCGACGTACTTGCAGAGGGGCGAAAGTACGAAGCCTTAGCAGCTGAGGCCACTGGGCAAAGTGCTGTAAAAAGAGACAGCTATCCAGCCAGCACAGAAGGAAAACACAATCCACTGCGTATGTTCAAACAAATGTATGGTGCGTCACCACAAAGCATGGAGCATCTAAAACCAGCATCCAATGTAAAGCAAACGTCATACACTGGCGATGTGATTCCCTGCTTTGGAACCATCAACATGCCATGGCAGTACAAAAAGTCCAGATGGATAGACGAAAAGTTCTATGTTGTTGATGTACCTGGACCTGCTGTGGTTGGACTACCCACAAGTGAGCTCCTCAGTCTTGTGACAGTAAATGTTGATGCAATGGGTGAAAAAGAAAACAATGGGCATGAGGGAAGACAAACAACAGAGAGTACCCGACAACACATAAAAAACATCAAAGAACTAAAAGAGAAATACCCAGACCAATTCTATAAAATTGGCATTTTTAATGGCACAGCAAAGCTCATCCTAAAGGAAGGTGCCAGTCCATTCATTGACCCACCACGCAAGTGCAGTACCCACATCAAGGACAAACTTCAAAATGAGTTAAACAAGCTTGTCGATCAAGGAGTCCTGCGAAAAGTAGAAGAGCACACGGATTGGTGTTCTAGTCTTGCCTTCAGCACAAAGAAGACGGCAGAGCATATCTTTCTTTGGCAACGTGATACAGACAAAGGCATCAGACCAGACCGAGCCAAAGTCCACGAAATACAAAAAATGCCAACACCACAAAGCAAAGATCAAGTTCATCGATTCATGGGCATGCTAAACTACCTGTCGCCCTACATACCAAAGTTTGCAGATAAAGCCCACAATCTGAGGGGATTGCTGAAAAGTGACTCACAGTGGACATGGGACACTGATTATCAGAAATGCTTCGATGACCTAAAGACAACAGTGACTGTTGATGCTTGCTTAAAATACTACAGTCCAGCAGCCACCCTCACACTTGAGGTAGATGCATCACAGAAAGGCATTGGTGTAGCACTGGTGCAAGACAACAGGCCCATTGCTTTCGGTTCAAAGACACTAACTGAATGTCAATCAAGATACAGCAACATTGAGAGAGAAATGCTTGCTATTGTGTATGTACATGTGCAGAACATCAAGATGCACAACCAAAAGAACCTCTCATTCCACACAAAACACCCACAAAGCCATGGCAGTACCTGGCGTCTGATCTGTTTGAGATCCATGTACATACTTACTGTGGACAGGTATTCCAAATATCCATTGGTCGATGAAATGCGCATTCCAGCAAGCAGCCATGCAGTTGCACAAAATATGCAAAAGTACATGTCTTTATTTGGTCGACCAGATGAAATAATGACAGATAATGGACCACAGTACACAGGACAACCTTTCAGGAAATTCATAGCTGACTGGGGAATAAAACACACCACAAGTTCACCGCACTACCCAAAAAACAATGGATTTATTGAAAGACACAGTGTAAGAGTGCTGGACAAGGAGAGGAAAACATGGCACCCAGGGACTATTGTAGAAAGATGCAGGGAGCCGAGAAGTTACCTGATCCAAACACCAAATGGAAACACTATCAGACGTACCAGGAGCCTTTTTCATGAAATGTATGCACAACACACACAGAAAATCCAGAAAAAGGTACAATTCGCTGAAACACCCAAAAGAGATGTGGTTGAACAAAGCCACAAGGATCCGATTGAAGACAAAATCACACAACCTCTTGAAACAAAAACAGACAATACAGGCAATGAGACAACAAGACCAACACGCACAAGGTCTGGACGGATCATAATAAAGCCAGCACAATACAAGGACTATGTGTAAAGCTGAATGAAAAGTCAAGCAGTAAAAAGAGTACCAAATATGGACTGAATGTTTATTTTTGCACACGTAACCAAACAGTTTATTATTGTTCATTATTGTTACAATGTGCACCCTATGA

Function

NR:

description
pol gene product {Gypsy/Ty3-class retrotransposon Cpr1}

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_10881609_10887779.mRNA True 2384 mRNA 0.42 7 10881461 10887897

Neighbor

gene id symbol gene type direction distance location
CI01000016_10865834_10867561 POMGNT2 coding upstream 13813 10865349 ~ 10867648 (+)
CI01000016_10760640_10783664 ANO10A, ANO10 coding upstream 97602 10760640 ~ 10783859 (+)
CI01000016_10756608_10758149 NA coding upstream 123260 10754393 ~ 10758201 (+)
CI01000016_10748252_10749230 NA coding upstream 132118 10748252 ~ 10749343 (+)
CI01000016_10676271_10682495 NA coding upstream 198622 10676087 ~ 10682839 (+)
CI01000016_10967556_10968779 NA coding downstream 79659 10967556 ~ 10969416 (+)
CI01000016_11277549_11278592 NA coding downstream 388658 11276555 ~ 11278855 (+)
CI01000016_11298638_11300240 NA coding downstream 409773 11297670 ~ 11300506 (+)
CI01000016_11311430_11313782 NA coding downstream 422984 11310881 ~ 11314080 (+)
CI01000016_11330944_11334103 NA coding downstream 442316 11330213 ~ 11334466 (+)
G99607 NA non-coding upstream 30181 10851057 ~ 10851280 (+)
G99557 NA non-coding upstream 44833 10832270 ~ 10836628 (+)
G99552 NA non-coding upstream 144582 10736587 ~ 10736879 (+)
G99554 NA non-coding upstream 144965 10736196 ~ 10736496 (+)
G99364 NA non-coding upstream 249336 10629463 ~ 10632125 (+)
G99636 NA non-coding downstream 2861 10890758 ~ 10891261 (+)
G99635 NA non-coding downstream 5461 10893358 ~ 10893733 (+)
G99679 NA non-coding downstream 58737 10946634 ~ 10946842 (+)
G99680 NA non-coding downstream 59031 10946928 ~ 10947157 (+)
G99681 NA non-coding downstream 59373 10947270 ~ 10947489 (+)
G99456 NA other upstream 582557 10294391 ~ 10298904 (+)
G99410 NA other upstream 644610 10234400 ~ 10236851 (+)
G99041 NA other upstream 955807 9924418 ~ 9925654 (+)
CI01000016_09796196_09842235 NA other upstream 1084521 9795950 ~ 9842576 (+)
G98288 NA other upstream 1878744 8996098 ~ 9002717 (+)
G99940 NA other downstream 783748 11671645 ~ 11672873 (+)
G100178 NA other downstream 1272744 12160641 ~ 12162845 (+)

Expression


Co-expression Network