Gene
RNA
| Item | Value |
|---|---|
| gene id | G99636 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 10890758 ~ 10891261 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU113362 | True | 504 | lncRNA | 0.38 | 1 | 10890758 | 10891261 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_10881609_10887779 | NA | coding | upstream | 2861 | 10881461 ~ 10887897 (+) |
| CI01000016_10865834_10867561 | POMGNT2 | coding | upstream | 23110 | 10865349 ~ 10867648 (+) |
| CI01000016_10760640_10783664 | ANO10A, ANO10 | coding | upstream | 106899 | 10760640 ~ 10783859 (+) |
| CI01000016_10756608_10758149 | NA | coding | upstream | 132557 | 10754393 ~ 10758201 (+) |
| CI01000016_10748252_10749230 | NA | coding | upstream | 141415 | 10748252 ~ 10749343 (+) |
| CI01000016_10967556_10968779 | NA | coding | downstream | 76295 | 10967556 ~ 10969416 (+) |
| CI01000016_11277549_11278592 | NA | coding | downstream | 385294 | 11276555 ~ 11278855 (+) |
| CI01000016_11298638_11300240 | NA | coding | downstream | 406409 | 11297670 ~ 11300506 (+) |
| CI01000016_11311430_11313782 | NA | coding | downstream | 419620 | 11310881 ~ 11314080 (+) |
| CI01000016_11330944_11334103 | NA | coding | downstream | 438952 | 11330213 ~ 11334466 (+) |
| G99607 | NA | non-coding | upstream | 39478 | 10851057 ~ 10851280 (+) |
| G99557 | NA | non-coding | upstream | 54130 | 10832270 ~ 10836628 (+) |
| G99552 | NA | non-coding | upstream | 153879 | 10736587 ~ 10736879 (+) |
| G99554 | NA | non-coding | upstream | 154262 | 10736196 ~ 10736496 (+) |
| G99364 | NA | non-coding | upstream | 258633 | 10629463 ~ 10632125 (+) |
| G99635 | NA | non-coding | downstream | 2097 | 10893358 ~ 10893733 (+) |
| G99679 | NA | non-coding | downstream | 55373 | 10946634 ~ 10946842 (+) |
| G99680 | NA | non-coding | downstream | 55667 | 10946928 ~ 10947157 (+) |
| G99681 | NA | non-coding | downstream | 56009 | 10947270 ~ 10947489 (+) |
| G99691 | NA | non-coding | downstream | 65967 | 10957228 ~ 10957449 (+) |
| G99456 | NA | other | upstream | 591854 | 10294391 ~ 10298904 (+) |
| G99410 | NA | other | upstream | 653907 | 10234400 ~ 10236851 (+) |
| G99041 | NA | other | upstream | 965104 | 9924418 ~ 9925654 (+) |
| CI01000016_09796196_09842235 | NA | other | upstream | 1093818 | 9795950 ~ 9842576 (+) |
| G98288 | NA | other | upstream | 1888041 | 8996098 ~ 9002717 (+) |
| G99940 | NA | other | downstream | 780384 | 11671645 ~ 11672873 (+) |
| G100178 | NA | other | downstream | 1269380 | 12160641 ~ 12162845 (+) |
