XLOC_007956 (mmgt1)


Basic Information

Item Value
gene id XLOC_007956
gene name mmgt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 31615577 ~ 31619408 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015534
GCGATTAGTGCGGCGGCGGTGATGACGCAGCGCTCATTGACGAGTGCTTCACGCGCCTCGCCACTGGCTCGATCGGTTGTGCTCGAGTGAAAATGGCCTCGTCCTTCTGGAAAGGTGTTGTCGGTATAGGACTATTCGCCTTGGCACACGCGGCTTTTTCAGCGGCACAGCACCGATCCTACATGAGACTGACAGAAAAGGAGAACGAAACATTACCAATAGATATAGTGTTACAGACGTTGTTATCATTTGTGATCACGTGTTATGGCATCGTGCACATCTCAGGCGAGTTTAAAGACATGGACGCGTCCTCAGAGCTCAAAAACAAGACATTTGACACATTGAGAAATCACCCATCATTCTACCTGTTCAATCACCGAGGCAGAGTTCTCTTCCGCACTCCAGAACAAGAGCCATCCACTCCAAACGCCCAGGCCTTGCCCTCCAATCCCCTGCGGTTACGCAAGCTGGAAAACTTTCATTAAGACTGGCCTTCAGTGGGCTGCCTTGCCcgttattctttgttttttttggtgaATTTATTTGTTAGCTCCTCAGTTGGAAGGAAGGGAAAATCCGCATCTTTTCCTGTCTTCATGTATATGTGAATATGCTGTACAAACATGCATCTCTTGTGGTTACTACTTTGTCAATGGACTGTGCCAACTCCTTTTTCCAGCTGATATGTCTGTAAATACTTGTTATTGCTTTGGAGTCTTAAGTCTATAGGTTACAGCCGTCGCACACAGCAGGGCACGAATCCTATCATGTACATTGTTGGTTTGGCACATTTCtggctgaactgaacttaactgCGGCAGGTTCTTCCCTGTACCCTTCTGAATTGAGGTCAATATTGTGGACCATAAATTATATTTGTGTTCAGAAACAGGATCTCTGGATCAGGATCTCTAAAATTTGAGCTTACGCAAATAACAATGagaatgattaaaactattaaaacatgTCTGAGCAAGGCCACGATAGATTATGTAGATTAATAGCAAATCTAACAATACTGTGAACATTCACTGGGAATGAATGGTACATTTGTTTTGAGGATGGGGGGTGATGATGTTTCCCGATTGATTTCGTGATGAGAAAACTCCTTATTTTTACCTTAATAAATTCTGAAGTTTTATTGA
>TCONS_00015535
TCCTACATGAGACTGACAGAAAAGGAGAACGAAACATTACCAATAGATGTAAGTTGCGAAACAGAAAACGCTTCTCATACTAAATCACATTGATTTGTCGTTCTCCTCCTCAAGTCAGCTTCTCTTGTGTTGTGTTTGCAGATAGTGTTACAGACGTTGTTATCATTTGTGATCACGTGTTATGGCATCGTGCACATCTCAGGCGAGTTTAAAGACATGGACGCGTCCTCAGAGCTCAAAAACAAGACATTTGACACATTGAGAAATCACCCATCATTCTACCTGTTCAATCACCGAGGCAGAGTTCTCTTCCGCACTCCAGAACAAGAGCCATCCACTCCAAACGCCCAGGCCTTGCCCTCCAATCCCCTGCGGTTACGCAAGCTGGAAAACTTTCATTAAGACTGGCCTTCAGTGGGCTGCCTTGCCcgttattctttgttttttttggtgaATTTATTTGTTAGCTCCTCAGTTGGAAGGAAGGGAAAATCCGCATCTTTTCCTGTCTTCATGTATATGTGAATATGCTGTACAAACATGCATCTCTTGTGGTTACTACTTTGTCAATGGACTGTGCCAACTCCTTTTTCCAGCTGATATGTCTGTAAATACTTGTTATTGCTTTGGAGTCTTAAGTCTATAGGTTACAGCCGTCGCACACAGCAGGGCACGAATCCTATCATGTACATTGTTGGTTTGGCACATTTCtggctgaactgaacttaactgCGGCAGGTTCTTCCCTGTACCCTTCTGAAT
>TCONS_00015536
AAACGATCACGCCTTTCCTCTCACCGTATATCATCGCCAGTCCAGTCTCGTGCAGAAACCTGAAGCGGCGGTGCTTGAACAGCCATATGACCGATCCTACATGAGACTGACAGAAAAGGAGAACGAAACATTACCAATAGATATAGTGTTACAGACGTTGTTATCATTTGTGATCACGTGTTATGGCATCGTGCACATCTCAGGCGAGTTTAAAGACATGGACGCGTCCTCAGAGCTCAAAAACAAGACATTTGACACATTGAGAAATCACCCATCATTCTACCTGTTCAATCACCGAGGCAGAGTTCTCTTCCGCACTCCAGAACAAGAGCCATCCACTCCAAACGCCCAGGCCTTGCCCTCCAATCCCCTGCGGTTACGCAAGCTGGAAAACTTTCATTAAGACTGGCCTTCAGTGGGCTGCCTTGCCcgttattctttgttttttttggtgaATTTATTTGTTAGCTCCTCAGTTGGAAGGAAGGGAAAATCCGCATCTTTTCCTGTCTTCATGTATATGTGAATATGCTGTACAAACATGCATCTCTTGTGGTTACTACT

Function

symbol description
mmgt1 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to contribute to membrane insertase activity. Predicted to be involved in magnesium ion transport; protein insertion into ER membrane by stop-transfer membrane-anchor sequence; and tail-anchored membrane protein insertion into ER membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be part of EMC complex. Predicted to be active in Golgi apparatus; early endosome; and plasma membrane. Orthologous to human MMGT1 (membrane magnesium transporter 1).

GO:

id name namespace
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040801-65 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to contribute to membrane insertase activity. Predicted to be involved in magnesium ion transport; protein insertion into ER membrane by stop-transfer membrane-anchor sequence; and tail-anchored membrane protein insertion into ER membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be part of EMC complex. Predicted to be active in Golgi apparatus; early endosome; and plasma membrane. Orthologous to human MMGT1 (membrane magnesium transporter 1).

Ensembl:

ensembl_id ENSDARG00000010553

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015534 False 1145 mRNA 0.44 4 31615577 31618243
TCONS_00015535 False 762 lncRNA 0.44 2 31615877 31616734
TCONS_00015536 True 564 mRNA 0.46 4 31616076 31619408

Neighbor

gene id symbol gene type direction distance location
XLOC_007955 mospd1 coding downstream 52782 31550759 ~ 31562795 (-)
XLOC_007954 dre-mir-457b coding downstream 93570 31521930 ~ 31522007 (-)
XLOC_007953 cab39l1 coding downstream 126167 31476973 ~ 31489410 (-)
XLOC_007952 NA coding downstream 146117 31466606 ~ 31469460 (-)
XLOC_007950 gpc3 coding downstream 149672 31176952 ~ 31465905 (-)
XLOC_007957 BX511227.4 coding upstream 13738 31633146 ~ 31635433 (-)
XLOC_007958 map7d3 coding upstream 49102 31668510 ~ 31715412 (-)
XLOC_007959 arhgef6 coding upstream 180379 31799787 ~ 31862720 (-)
XLOC_007960 AL929434.1 coding upstream 240022 31859430 ~ 31859506 (-)
XLOC_007961 AL929434.3 coding upstream 241000 31860408 ~ 31860470 (-)
XLOC_007641 CU855896.1 misc downstream 29207737 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 29208146 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 29208505 2406945 ~ 2407072 (-)
XLOC_007951 BX248522.1 non-coding downstream 288860 31326601 ~ 31326717 (-)
XLOC_007930 FP015860.1 non-coding downstream 1078693 30511481 ~ 30536884 (-)
XLOC_007925 NA non-coding downstream 1317406 30297374 ~ 30298171 (-)
XLOC_007962 AL929434.2 non-coding upstream 241342 31860750 ~ 31860827 (-)
XLOC_007963 NA non-coding upstream 261874 31881282 ~ 31889260 (-)

Expression


Co-expression Network