XLOC_007957 (BX511227.4)


Basic Information

Item Value
gene id XLOC_007957
gene name BX511227.4
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 31633146 ~ 31635433 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015537
CTGACAGGACAGCATCTGAGTTGTGCCTCCACCGCAGATCCAAACCGTGAAGAAGACCACCAGCAGCGTGGTAGAAAACATCATCTGCCGTGCATATGTAGCTGTGTCCCTGATGGACAGGGCAAAAGTCATGGCACCACGAAGACCTAATGAGAGATTAAATCTTGGCTGGCTATTACCAATCTCAAGGCACAAACCTGCGAACATCATCATGTGCTGGAAGTTGGAGCTGATCTTGTTTCTACGGCCCAAATTCAGCAGGAAAGAGAGTGGATAGATGTTCGCCGCTCTGCCCAGAAACACGGCCAGCTGGGAGGAGAAGTGTCAAGGAGAAACTGCAGAAATAAAGCTAATACTGCACTGACTGCATCTACAATCCCTTCG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102499

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015537 True 384 lncRNA 0.49 2 31633146 31635433

Neighbor

gene id symbol gene type direction distance location
XLOC_007956 mmgt1 coding downstream 13738 31615577 ~ 31619408 (-)
XLOC_007955 mospd1 coding downstream 70351 31550759 ~ 31562795 (-)
XLOC_007954 dre-mir-457b coding downstream 111139 31521930 ~ 31522007 (-)
XLOC_007953 cab39l1 coding downstream 143736 31476973 ~ 31489410 (-)
XLOC_007952 NA coding downstream 163686 31466606 ~ 31469460 (-)
XLOC_007958 map7d3 coding upstream 33077 31668510 ~ 31715412 (-)
XLOC_007959 arhgef6 coding upstream 164354 31799787 ~ 31862720 (-)
XLOC_007960 AL929434.1 coding upstream 223997 31859430 ~ 31859506 (-)
XLOC_007961 AL929434.3 coding upstream 224975 31860408 ~ 31860470 (-)
XLOC_007962 AL929434.2 coding upstream 225317 31860750 ~ 31860827 (-)
XLOC_007641 CU855896.1 misc downstream 29225306 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 29225715 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 29226074 2406945 ~ 2407072 (-)
XLOC_007951 BX248522.1 non-coding downstream 306429 31326601 ~ 31326717 (-)
XLOC_007930 FP015860.1 non-coding downstream 1096262 30511481 ~ 30536884 (-)
XLOC_007925 NA non-coding downstream 1334975 30297374 ~ 30298171 (-)
XLOC_007963 NA non-coding upstream 245849 31881282 ~ 31889260 (-)
XLOC_007966 NA non-coding upstream 433371 32068804 ~ 32134037 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G20115 NA non-coding NC_047596.1 CM018542.1 1803136 ~ 1805758 (+)