XLOC_007963


Basic Information

Item Value
gene id XLOC_007963
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 31881282 ~ 31889260 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016415
cacatttgtacttaaagggttcatATTAATACTTCAAAAGCatatatttgtacctaaaatgtTAAGAGGTACAGTTTTGTACTTTTTGGAACTAATATCCCCTTATGTATTACTATGAAcactttaggtacaaatgtgtaccttttgaaaaggtaccaccccagtgactgctcctgtacttttatttttgagagtgtatgcaggacaccggcaattcaggactgagtttggaaacCCCCGCTCTAATGTGTTAGCTGTGCTTTATGATTAGTAAACAACACTGATGACAACTGAAAAGCTTAGCAAACAATGTTTCCTTGTAGGAACTAAGGAGATGCATGTAAAGATGATAAAATGCCTAGATTATCTTTTAGTCAAGGGTTACACTAcagttaaaaacatttaaatgcagcaaaatgcattaaatgtaacatttttaacaataagaaatgttttttgaGCAGAAAATCAGCATATTCGCATTATTTCTGAAGGTTCATGTGGTACGACGATTGGAATGCTGctgaaaaatacaattaaaatatattacaatagaaacagtagtttttaaaatagtgagaacattttacagtattactgtttttattgagGTAAATGCAGTCAaaaacaattgaagtcagaattattagtcctcctgaattactagcccccctgtttattttgtcccacatttctgtttaacatttttcaacacatttctaaacataatagttttaataactcatttctaataactgatttattttatctttgccatgatgacagtaaataagacacttctatacagtttaaagtgacaattaaaggcttaaaactaggttaattaggcaggtttaggtaattaggcaagttgtataatgatgatttgttctgtagactattgaaaaaaatagcttaaaggggctaattatttcaaccttaaaatggtgttttaaaaaattaactgtttttattctagccaaaataaaacaaataagactttctccagtagaaaaattattatcagacatactgtaaaaatgtccttgctctgttaaacatcattagggaaatatttaaaaaagaacaaaaaaatcttaggggggctaataattctgacctcaactgtaaatACAAACTTGGTGAGCATATGAGaatactcaaaaaaataaaataaaataacattagcgTATGTGTATGGGAAAGTGTCTCAAAATTGACTGCGCTGTTATGGTTATTCAGACTAGAAATCTGAAAAATCATttgattaaatgaaatttcaataCCTTTCTGTgtggtttaaaatattaaaaaaatacagtagaaGTGCTCCATACAGAATATTGAGTTTCATTTAGCAGTTTACTGTAATactgaaatattaattaaaatgatgaaaatatTTTTGAGACCATATATAGTAGTGTATAATGTCTTAAAAGATGAATGTTCTTTGTATACATCAATGTCAAATGTACAGATACTTTTAAAGACAAAGTAATCTTTGTTGTTTTGAAAAAGATTTTAGAAAACATGTTGAGAGATTTCTGTCTATTTTTCTAAGCATACATATCAACTGAATCATTGTCACTGGAAGAAAAGTTCTCCTTAAAAGTGTAAactgtaaaattgtatttatttatttattcatttatagttAATGCACCAATAATACTTAAGCGATGAATCTCATCAACTTTAAAGTATGAGtctgttattaaatgtatttcttttggtatttttaaagtgtaaaaaagtgtcattattttatttagtattttgtagatatactgtatatacaggaGGAGGTTCTAAATTAGAGGACAATTAATATACACTTGACCTTTTAGAAAAATACAATCTTTCTTCATAGTTCAAATTGGTCATCATCTGATCTGGACATTCAGATGCTTAAAACAATTCACCATCTTGCAAAGGGTTTATCAGATAATTAAGGAAATTACCAGGAGGCTCCAGATTAACACCACTAACTGTGAGGAATCTGGAGGTGTACTCTTAAGTTTGATCAgtattcttctttaaatattttatcagaTTGTTTACTGTGCTTCATAACTCATGAATTATGCTAAAAATGCTATTTAATTCCTACAACCAAAACGTCAAACTTGATCAAGCAGTGACATCAAATGTAAGAAACAGTAGGTTGTTTTCTAGttttgatctccactgtataTTAGAAATATTAAGCTTATTTTCaggctattaaaaatgttatcaaCCAATTCTCATGACCATAATGTGGTGCCTGCTTtgatttttaacatatttttaggTTCATATTTTTTGTGGTGGTGCACTCACATTGCACTTTTTGCATACTAGATGTGCACCCTTGGACTGTTTTTTGCATCCCAGACTCTTTAAAAATACTTGCCTCAGCCTACCTTTTTGCAAATCATAAAACATGTTGTGCctggtacattttgttgcacgttttagAGGTCAAATCCACCAGAAATGTTACTTTGGGTAAATTTTGCTATACATTTTAGAAGCAAGTCCTTCTTGTATAAGTCTATGAGAAGACAGAGCTTATCGTAACCCTTCACCAAACCCAAGTTTTTAACCATAATAGAAATGTGCACTGCAACCAGGTAGTTTTACCAGTCTGATTTTACGAGGAAGTGTAATTATTTAACGTGTTGCCAGAAAAGTGATTTCATTCATATAAAAAAACGTAACCTGTTTAAAAGGAGCAAACCATACTTCTCATTGAGGAATGAGCAAATCAAAGaatttaatatgaattagccactaaggcCCTGATCACACATAATGCACTTTTTGTGTTGTGGGAAAGCTTTTGAATGGTTTTCTAATCGCTGTGAGTTTTGCGTGCTCTTACAGTAGAGGTCTGCGcgggacacttttttttttgctctcgcAAAGTTTTATTCCACAGCCGACCGCTCCCACTGTATATTCAGCCTTTGCTCACCTACTGCCCGCTTGGAATCATTTTCTACCCTACCCGTAcactaaatttagatctggtttccaaaatctcacgtttgaattgggtactaccaaaagTGAAAGAGAACAGATCAAATTTTAAGTTGTGCAAGGATTATTGGCTAAATATCAGTTTTGTTTTTCCCTTTGTGATGAGATATGGGTGCCGCTTTAAAGCTGAGGttccagtcttgtgactgctaaaGGGTAAAACCTTGAGGCATTATCCCATCGCACAAAGGGTCATTTTTTCCATTTGCGCTTAAAAAAACTCCCATACTTCAGACTtgcctgatgtgggtttcctTACAGTAAACTGACCGttttctaatgcaagctgaaAAACAGCACATCTTCACTCTGCTCTCCCATGTTAGTAAAGCCCACTCTGAGGACTGTTATTCAGATGATGTACGcacagaatgtaaaaaaaaagcatgtggaGAAAAGCACTGGTTATGCTTTCAGGATGTGTAACAGTCGTACTGGCTGTACCGGTGCTCAATAAGCATGAGGAAATCACAGATATGCTATTCCGAAATATTGTTGGGACTTGAAAATGCTGTATTGTTAGCCTGCCCTACTGcgttttattcggaaatgtattcctaTGCGTTAAGAAATTTGGTCATGTCCTGCAGTACAGCTGTGGGAATGCAGACCTTTAGCGAATTTTTATAGCCTGCTGCACCTCGGGTTTTTGTCGTTGCATGCTTTGCGCCCCCAATTGCAAAAAACTGAAAAAGCAAATTAGGTCAGTCGAGGGCAGGGTTTCTGTTGAGCTGACAGTAGTGTAAATGTTGTCTTGATAACAacagagacttttaaagatggagagACTAGTGGTCACTATATGGCTTCATAAATTTTGAACATcccaatattattaaatattacaattccaacaatatcaacagcaatgCTCGCGcacaatacgcagctgattcTGTGGTtgcctagtgacataaaaaaaaacatgtgtcaaCAATTAATGGCAGTGTGGTGCACCTTGTGTTCCCAGAATGGAAAAGTGCATTTTGTGTGATCGGCCACCAAATCAaacagttatgaattgccataAGATTGCACtgagttttaccttgattttgcattgtttttatcTCTCTTGGGAAATGTGCTTTAGTGACTCGAAACCAAGAGCTTTGCATCACAAATACAACATCGTACAAAGTGAGCTATCGAGCAAACTGACCAAACCAGAGCAATTGTCCATATGTAGATAGAAAGTTGAGGCAAATGAATCAGATTACAAATTATGGACATAGCTAAGGtggtttgtgttatttttttattcttgtgcATGAAACCAcatgaaaataatcctttattcatgAAAAATATGTCCCTGTAACATCACACTGCCCTGTAGTAGTTTCTATCTAGAAACTACAGTCTAGCGAAGTACgtttttaaagttttacaaaataaaatgtaggctgtggcacatattttcaatgagcctgtttagaaaaaaaatacaataattttatttattgtattataataaaaaaaaatacttttaactcAACAGGACATTTAACTCGAGATATTTATACATCATGCTAGTATTTGCTGAACTGCCTTTAAGTAATCAAATatactttatttcattttcatttttgggtgaaatgtgACCTGGAGATTCACCCAAGAGCAGCTAATGAGCTACGGATCTCAGGGTATTGATGATGTACCTCTTGACCAGTGTTGAGAGTCAGCTCTCTTTAAGAGTGCCTCCCTCGATAAATTGTACTTTGTGTCTGTTTGGTATAAGTTGTTCGATCCCCTGGCACTGCCAATATATTATATAACCGCTGACTTGATGCGGGATTAAACGATGACTTCACGAATGATGAAGCACTTTGTTATTGACCATGCACTTAGCTTGACCCTGCACAAAATGGTACAGCTGGTGCTTCGTTATTAATTCCTGGGTTATTCAGAAGTCAACTGTGTATCAAAGCCGCAATTCCTTCTGCTACAGCAAAGTATTATTTTGAAAGTGCAGCAATACAAATTACAGAAAATATCAACTGTATGTCAGTTTCCATTGATGTCTGCAGCAACAATCAGACTTTCACAAACAGAACCGCAAACAAGTCATCATATGTTTACTATAGCTgactgttttatatttaaaaaacaagagTTTAGAAGTAGACATTTTTGTAATGATGTACTttgtgctttattattatttttttccttcattaCAACATGGTGAAGAATGTTTATGTATACCTCATATGACCTGATGAAGCTCAGTACATTCTGtgagttttaaattaaaatgattgagAACAAAAATGTgcaagcatgtgtgtgttttttaagttGTGACATTTAAATAACTTACAAAGTACAAAATCTCAACCCCATTATTTAGatattattgtataaaaaaaacatagtaaaaatGTGCTTCATAAACCAATTTCCTTCACTCCATAAAAAACAATTCCTCAGTGAGATAAAATGATTAACACATGGAATAAAGTAGTGATATGCTGTCAATGGCATAGTAACGATTATTATTGATATCCACCAATATACTTTGGTGTGGTTTTACATGCCTAAAGGTGCGCTCACATTAGCCAAATCTCACAGGCTAAAAAGCATGCAGTTTTCTGTCATCAATACAGCAATTATACATGAACATGTACACAGTAAGTGTGGAGAGCATTTCTGATTTTGCTGGGAAAAAGCTCATTTAAAGGCCAAATGAGCAACTTAAGATGAAACGAAATTGATAGACAATGAAAGcattgtcaaaaataaatatatcttatAACACAGTGATAACTCAAACCAAGCAGCTTTTGTAAGTCAGTGCTGTGATTTTGAATGAAGTCTGTGTGTGGATTTTGTGAAATTCTGGATTTCAAAAACAAATTTTGAAAAAGCTGcactaaatataaacacatttttgggtgaaatttcACAGCCAATAAAGACTTGTTATCCTTCATAATGGTCTGTTACTGATTACAAATGACATAATGAACTTGTTTAATTTGTTCCCTGGTTAGCAAGAGATTGCCTGGCCATTCTATATTGACAACATTTAAAGCTTAACCATTCCACATCATCATAttttagaaagaaaaataaaagcaacaaataagaTTTACAGAGAATCGAATGATTAATATGCTGCCATTGTGGGCATCATTTGTGGTCATCAAATTCATAAACTCTAATCTGATGAGCATTTCAAAACACTCACCTTCATAGACCACTGACTGAACTACTGACATATATGGCACACAAAATGGTAAACACTTTTGAGTTTCAAAGTTGTCAATgagggtatatgcacacagacttcaACTTTTTAGCCAGCCAGCCCGCTGGCTTCCGGTGAACTGACTTTCTATTTCAAAAttgccacgtttaagatctgttttctttaaaaatctgtgatcttcactgcctaatAGATAATTGATATAAAGCGAGTCTCAGACcggacaaaaagcactgcattcaattacATTTCTCCCTGCCAtccctttaaaatatgaacatttattttacctcagtattttgaatggagtttctgtgctagcgTGCTGGTTCTGGTGGTTACATGGTCTGTCTGCTTGCTTTACACTTAAACAACTaaaatgcttaagtttatttaactgtgtATTAATTACATTACGATGTTGAtactgtaaaagaaaccttataaaatttaatttagtcACAGAAACCTTTAACCATAAGTTTACCTTTGGCTGAAAAACCCTaactgtgcatataacccattttgTGGATGAATTCTGTAGAATTCCCAgtagacgtgtgtgtgtgtgtgggtacaAACCCATCACATAGCAAAACCTTTTATATGGAAGAAGAAAATCTTTGCGTTTACAACTATGCTTATTAGTACTTATCATAATCATCTAATAGCTGCGTTTTCAAAAGAATGTGTTTGCTACATTGTTATGACCCTATCATGACTCATTACAAAATTGTAATTGGTTGATTTATCAGTAACGTGGACTCCGGCAAGTCTTTGGCCAATGAAAGCTGCAAAAAGAGTCCTCCAGACATTTTTGCCTTGAGTCTTAAAATAAGTCCATGTAAGATTATATCATAGCAACTAATGCTAAAAGAAAAAGCTACTAAAGTGCCTATAGACACTTGCCTTCAGAATAGCCAGGGTGTGTTTAAGCTCACTAAAAACACTTTAGTGCACACACAACCTAAAACTTGCACCCCAGCTTAAAAAGAAAACGAGACAAACAAAAGATGAACAGGAATAGTTGAATTAAATATTGAAACGATTACTAAAACAAAGTAAGAAAGAGATACAATTAGGTCAATATAAATGCACTTTATACATAAGATATGCGCTCAAGTTTTATCTGGAAATAAAGTAAGCCAATGTGAGGCAAGTAAAGCACTGAAAAGGTCTTTGGAGTTCACACGCACACCTACTGCAGGGAATTACAGCTGATCCATACAGAGAAGAGGAGAGGGAAGAAGACTGCCGTCGACTTCTCCCTTTCTTCAAATGTATCTTCAGACTTCCACATGAAGTCCATCTGTAACAAGGCGATGTTGTGTTCTCCAAACGTCCCTCCATTAGTCCACTTTCAGCAcactgtagattttatttacaAAGAAGAAGCAGGCAAAGAAGCCTATAGTacctaaataaaagaaaaaatgtgtgagaattaatacaaaaaatatgataACCAGTGGACCGGCCATCAAAACCACCTTTTTTagtacatacagttgatgtcagaatttttagccctccttaattattagtccccctgtttattttttcccaatttctgtttaacagagagaggatttttttcaacacgtctaaacataatagtttttataactcatctctaatttctgatttattttatctttgccatgatgactttCAAGACACTATTATTtagcttaaaattacatttaaaggcttaactaggttaattaggtta

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016415 True 7979 lncRNA 0.34 1 31881282 31889260

Neighbor

gene id symbol gene type direction distance location
XLOC_007959 arhgef6 coding downstream 18562 31799787 ~ 31862720 (-)
XLOC_007962 AL929434.2 coding downstream 20455 31860750 ~ 31860827 (-)
XLOC_007961 AL929434.3 coding downstream 20812 31860408 ~ 31860470 (-)
XLOC_007960 AL929434.1 coding downstream 21776 31859430 ~ 31859506 (-)
XLOC_007958 map7d3 coding downstream 165870 31668510 ~ 31715412 (-)
XLOC_007964 gpr101 coding upstream 741 31890001 ~ 31893996 (-)
XLOC_007965 zic3 coding upstream 122429 32011689 ~ 32016615 (-)
XLOC_007966 NA coding upstream 179544 32068804 ~ 32134037 (-)
XLOC_007967 fgf13a coding upstream 294718 32183978 ~ 32428689 (-)
XLOC_007968 NA coding upstream 543188 32432448 ~ 32435306 (-)
XLOC_007641 CU855896.1 misc downstream 29473442 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 29473851 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 29474210 2406945 ~ 2407072 (-)
XLOC_007957 BX511227.4 non-coding downstream 245849 31633146 ~ 31635433 (-)
XLOC_007954 dre-mir-457b non-coding downstream 359275 31521930 ~ 31522007 (-)
XLOC_007971 NA non-coding upstream 775369 32664629 ~ 32755070 (-)
XLOC_007973 AL590151.1 non-coding upstream 884412 32773672 ~ 32789588 (-)
XLOC_007979 BX247946.1 non-coding upstream 1024420 32913680 ~ 32918834 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000242_00475400_00477268 NA coding CI01000242 null 475357 ~ 478060 (-)