XLOC_007971


Basic Information

Item Value
gene id XLOC_007971
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 32664629 ~ 32755070 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016420
ATGAATTTGTTCCAATATACAGAAGCCTGAACAAAATTTGACATCAGCAACAAAAGTTTGTTCACCAGTTTCGAAGCCCTGCTCATCAGGATACCTCCATACTTGAAAGAACatatccagaaaaagaaaagagtcATCTAGTGACAGTTCACATCCAATCTGACAGAGCTGAAGCATCTACAGAGAAGAATggcagaaaaacaaaatgcagatGTGCAAAGATTACCACATCAAATCCAGCAGACCTGAGACTGCTAAAGCCAGAGAAATGTGTGACCTGCAGTGATTTGAACAGGTGTTGGCGATGCCACTTCTCTTCTGTGCTGCATCTCTCCTTTAAATCCATTAAGATCATCAAAACATGACAGGGGGATCATCAGTCTGTCTGCAGGACGAGCTGCGTCCTGCCCAGCAAACcagctcacactcacacactctctaaACAGGCTTGGAGCGACTGAAGCTGCTGTCCGGTTTGAAGATGCTCATTAGGACACAACAGGAAGCAGTTGGTCAGTTAGTAGAGCACATGCAGGTTACCAGCAACAGGTGGACAGCAGCACACAGGCACATATGAAGGgaaggcaggcaggcagacagacagacagacagacgtacCAGGCGGGCAGGCAGACAGCGGGCAGACAGCAGGGACTTAAATTTATTCGTCAAACCAACAATCTCACCCCAACACCCACCGAAGTCCCCAAACACACACTCTGTTGTGAAAATCACACAAGCATCTTGCGAGAGATGTAAAATAATACAGACAGCCACAGTGAGCGAGCGAGGGAGATTAAGGGGAAGTGACAGAGCTGGCGCAGGATGTTTGACTGTTTGCTCTTGCTTTAACAACATCCTCTGCGCAGACACCCGATGAGGACAGAGATACAGGACTGAACCATTGTTCTGCTTATCTTCGTCCGGGCTCATATCTGCTGGCCCAGGGGCTATTGAGGAGCGGATGACCACTGAtagagacacaaacacacaaactgcAGGGAAGGACTGGCTCTAATTAGTGGATCAACATATTGGTGATGATGATGCTTAATTATCCTTGCTCATGTTGGATTTGGAGGTAAATCTGTGTTGGCAGACACTGAGGAGATCTAATTTAAGTCATAAATGTACTCATTTTCATATAGATTTGGAGGGTTTAATCTGCTGTTTGAGAAGAGAATATTTTGCTCAGAAAAAAATGTTAGGTTTAACtgtatgattaaaaaaatgtcatgaaACGAagcctttttatattatataaattgatTGTCATGATTAttttaactataataaaataatttcagtgCTGTGAAACAAATGCatacataaaattatataatgataaaaaattaaataatattatttagtattttgttattatatgcatttttgaATTGTTGAAATGttgaattttataataatataattagtgccgggcaaagattaatcacacccaaaattaaagtttgtttttacataatatatgtgtgtgaattaaatatatttaagatttAACACTTGCTTGACGCTATTAACAGGTTTGTcgtgctgtcccaggagaaaACCCTATGCTCGGAGATAAtagagcccagggctcctgcctggtcaataagcatataagggggtccaagatcaggtaggtctgGAAAGCTCCACCAAAAGGAGGAGATTGGTGGAAGGGGG
>TCONS_00016419
ATGAATTTGTTCCAATATACAGAAGCCTGAACAAAATTTGACATCAGCAACAAAAGTTTGTTCACCAGTTTCGAAGCCCTGCTCATCAGGATACCTCCATACTTGAAAGAACatatccagaaaaagaaaagagtcATCTAGTGACAGTTCACATCCAATCTGACAGAGCTGAAGCATCTACAGAGAAGAATggcagaaaaacaaaatgcagatGTGCAAAGATTACCACATCAAATCCAGCAGACCTGAGACTGCTAAAGCCAGAGAAATGTGTGACCTGCAGTGATTTGAACAGGTGTTGGCGATGCCACTTCTCTTCTGTGCTGCATCTCTCCTTTAAATCCATTAAGATCATCAAAACATGACAGGGGGATCATCAGTCTGTCTGCAGGACGAGCTGCGTCCTGCCCAGCAAACcagctcacactcacacactctctaaACAGACTTAAATTTATTCGTCAAACCAACAATCTCACCCCAACACCCACCGAAGTCCCCAAACACACACTCTGTTGTGAAAATCACACAAGCATCTTGCGAGAGATGTAAAATAATACAGACAGCCACAGTGAGCGAGCGAGGGAGATTAAGGGGAAGTGACAGAGCTGGCGCAGGATGTTTGACTGTTTGCTCTTGCTTTAACAACATCCTCTGCGCAGACACCCGATGAGGACAGAGATACAGGACTGAACCATTGTTCTGCTTATCTTCGTCCGGGCTCATATCTGCTGGCCCAGGGGCTATTGAGGAGCGGATGACCACTGAtagagacacaaacacacaaactgcAGGGAAGGACTGGCTCTAATTAGTGGATCAACATATTGGTGATGATGATGCTTAATTATCCTTGCTCATGTTGGATTTGGAGGTAAATCTGTGTTGGCAGACACTGAGGAGATCTAATTTAAGTCATAAATGTACTCATTTTCATATAGATTTGGAGGGTTTAATCTGCTGTTTGAGAAGAGAATATTTTGCTCAGAAAAAAATGTTAGGTTTAACtgtatgattaaaaaaatgtcatgaaACGAagcctttttatattatataaattgatTGTCATGATTAttttaactataataaaataatttcagtgCTGTGAAACAAATGCatacataaaattatataatgataaaaaattaaataatattatttagtattttgttattatatgcatttttgaATTGTTGAAATGttgaattttataataatataattagtgccgggcaaagattaatcacacccaaaattaaagtttgtttttacataatatatgtgtgtgaattaaatatatttaagatttAACACTTGCTTGACGCTATTAACAGGTTTGTcgtgctgtcccaggagaaaACCCTATGCTCGGAGATAAtagagcccagggctcctgcctggtcaataagcatataagggggtccaagatcaggtaggtctgGAAAGCTCCACCAAAAGGAGGAGATTGGTGGAAGGGGG
>TCONS_00015579
GACAGGGGGATCATCAGTCTGTCTGCAGGACGAGCTGCGTCCTGCCCAGCAAACcagctcacactcacacactctctaaACAGACTTAAATTTATTCGTCAAACCAACAATCTCACCCCAACACCCACCGAAGTCCCCAAACACACACTCTGTTGTGAAAATCACACAAGCATCTTGCGAGAGATGTAAAATAATACAGACAGCCACAGTGAGCGAGCGAGGGAGATTAAGGGGAAGTGACAGAGCTGGCGCAGGATGTTTGACTGTTTGCTCTTGCTTTAACAACATCCTCTGCGCAGACACCCGATGAGGACAGAGATACAGGACTGAACCATTGTTCTGCTTATCTTCGTCCGGGCTCATATCTGCTGGCCCAGGGGCTATTGAGGAGCGGATGACCACTGAtagagacacaaacacacaaactgcAGGGAAGGACTGGCTCTAATTAGTGGATCAACATATTGGTGATGATGATGCTTAATTATCCTTGCTCATGTTGGATTTGGAGGTAAATCTGTGTTGGCAGACACTGAGGAGATCTAATTTAAGTCATAAATGTACTCATTTTCATATAGATTTGGAGGGTTTAATCTGCTGTTTGAGAAGAGAATATTTTGCTCAGAAAAAAATGTTAGGTTTAACtgtatgattaaaaaaatgtcatgaaACGAagcctttttatattatataaattgatTGTCATGATTAttttaactataataaaataatttcagtgCTGTGAAACAAATGCatacataaaattatataatgataaaaaattaaataatattatttagtattttgttattatatgcatttttgaATTGTTGAAATGttgaattttataataatataattagtgccgggcaaagattaatcacacccaaaattaaagtttgtttttacata
>TCONS_00015580
ACAGGGGGATCATCAGTCTGTCTGCAGGACGAGCTGCGTCCTGCCCAGCAAACcagctcacactcacacactctctaaACAGGCTTGGAGCGACTGAAGCTGCTGTCCGGTTTGAAGATGCTCATTAGGACACAACAGGAAGCAGTTGGTCAGTTAGTAGAGCACATGCAGGTTACCAGCAACAGGTGGACAGCAGCACACAGGCACATATGAAGGgaaggcaggcaggcagacagacagacagacagacgtacCAGGCGGGCAGGCAGACAGCGGGCAGACAGCAGGGACTTAAATTTATTCGTCAAACCAACAATCTCACCCCAACACCCACCGAAGTCCCCAAACACACACTCTGTTGTGAAAATCACACAAGCATCTTGCGAGAGATGTAAAATAATACAGACAGCCACAGTGAGCGAGCGAGGGAGATTAAGGGGAAGTGACAGAGCTGGCGCAGGATGTTTGACTGTTTGCTCTTGCTTTAACAACATCCTCTGCGCAGACACCCGATGAGGACAGAGATACAGGACTGAACCATTGTTCTGCTTATCTTCGTCCGGGCTCATATCTGCTGGCCCAGGGGCTATTGAGGAGCGGATGACCACTGAtagagacacaaacacacaaactgcAGGGAAGGACTGGCTCTAATTAGTGGATCAACATATTGGTGATGATGATGCTTAATTATCCTTGCTCATGTTGGATTTGGAGGTAAATCTGTGTTGGCAGACACTGAGGAGATCTAATTTAAGTCATAAATGTACTCATTTTCATATAGATTTGGAGGGTTTAATCTGCTGTTTGAGAAGAGAATATTTTGCTCAGAAAAAAATGTTAGGTTTAACtgtatgattaaaaaaatgtcatgaaACGAagcctttttatattatataaattgatTGTCATGATTAttttaactataataaaataatttcagtgCTGTGAAACAAATGCatacataaaattatataatgataaaaaattaaataatattatttagtattttgttattatatgcatttttgaATTGTTGAAATGttgaattttataataatataattagtgccgggcaaagattaatcacacccaaaattaaagtttgtttttac
>TCONS_00016421
ATGAATTTGTTCCAATATACAGAAGCCTGAACAAAATTTGACATCAGCAACAAAAGTTTGTTCACCAGTTTCGAAGCCCTGCTCATCAGGATACCTCCATACTTGAAAGAACatatccagaaaaagaaaagagtcATCTAGTGACAGTTCACATCCAATCTGACAGAGCTGAAGCATCTACAGAGAAGAATggcagaaaaacaaaatgcagatGTGCAAAGATTACCACATCAAATCCAGCAGACCTGAGACTGCTAAAGCCAGAGAAATGTGTGACCTGCAGTGATTTGAACAGGTGTTGGCGATGCCACTTCTCTTCTGTGCTGCATCTCTCCTTTAAATCCATTAAGATCATCAAAACATGACAGGGGGATCATCAGTCTGTCTGCAGGACGAGCTGCGTCCTGCCCAGCAAACcagctcacactcacacactctctaaACAGGCTTGGAGCGACTGAAGCTGCTGTCCGGTTTGAAGATGCTCATTAGGACACAACAGGAAGCAGTTGGTCAGTTAGTAGAGCACATGCAGGTTACCAGCAACAGGTGGACAGCAGCACACAGGCACATATGAAGGgaaggcaggcaggcagacagacagacagacagacgtacCAGGCGGGCAGGCAGACAGCGGGCAGACAGCAGGGGTAGGTGCCTGAGAGTCCGCACTGTGGCAGAGTAACAGATGTGTGGTGAATCTTTAACTTCGCTCACTCCCCACTGTCACTGCATCTGTGCGCAGCCCCTCTGCCTCAGCCAAACCCCCTCCTGTGTGAAAGAACGCAACAATAAAAAGCTATCAGTGCACTTATTGATTAGCCTGCGGTGTCAGGGATGCTGATATTTAATGATCTGCAGGTCACACCGTCTTTCTGCAGGTTACGGTGGTGCTCTTTCTGTTAAACgtttaattaaaaatcaatgatGAATGCTCCGTA
>TCONS_00015581
ATGAATTTGTTCCAATATACAGAAGCCTGAACAAAATTTGACATCAGCAACAAAAGTTTGTTCACCAGTTTCGAAGCCCTGCTCATCAGaaagCCCGTAAAGTCTGAGAAAATCGATCCAAACAAGCCTTAATTCTGTCATTAGGTGAGAGGGAGCCGTGGGCTGATTGGCTGCCCGTCTGCTCCATATTCAGAGGTGCTGGATGAGGCAGAGGGCCTGCTGGGTAAAATGCTGCTGTAATCAGGAGCCGGCTGTGCTGCCTGATCAGGATACCTCCATACTTGAAAGAACatatccagaaaaagaaaagagtcATCTAGTGACAGTTCACATCCAATCTGACAGAGCTGAAGCATCTACAGAGAAGAATggcagaaaaacaaaatgcagatGTGCAAAGATTACCACATCAAATCCAGCAGACCTGAGACTGCTAAAGCCAGAGAAATGTGTGACCTGCAGTGATTTGAACAGGTGTTGGCGATGCCACTTCTCTTCTGTGCTGCATCTCTCCTTTAAATCCATTAAGATCATCAAAACATGACAGGGGGATCATCAGTCTGTCTGCAGGACGAGCTGCGTCCTGCCCAGCAAACcagctcacactcacacactctctaaACAGGCTTGGAGCGACTGAAGCTGCTGTCCGGTTTGAAGATGCTCATTAGGACACAACAGGAAGCAGTTGGTCAGTTAGTAGAGCACATGCAGGTTACCAGCAACAGGTGGACAGCAGCACACAGGCACATATGAAGGgaaggcaggcaggcagacagacagacagacagacgtacCAGGCGGGCAGGCAGACAGCGGGCAGACAGCAGGGGTAGGTGCCTGAGAGTCCGCACTGTGGCAGAGTAACAGATGTGTGGTGAATCTTTAACTTCGCTCACTCCCCACTGTCACTGCATCTGTGCGCAGCCCCTCTGCCTCAGCCAAACCCCCTCCTGTGTGAAAGAACGCAACAATAAAAAGCTATCAGTGCACTTATTGATTAGCCTGCGGTGTCAGGGATGCTGATATTTAATGATCTGCAGGTCACACCGTCTTTCTGCAGGTTACGGTGGTGCTCTTTCTGTTAAACgtttaattaaaaatcaatgatGAATGC
>TCONS_00015582
CAGTGCAGGGAGGGCTCAGCTTGGCTCGGCTTGGCTCTTCTGCGGGACGGAGGACTGACGCTCCCCTGCGCTTCTCTCTCGGCTCAGATCGGCAAGGTTTGACAGTCTCACCCGGCTCTGTCCAGCTAAACCGTCAGCAAGACCTAAAAGACGCAGAGGGAAGGATTGGCACCGatgaaagtgcattttctttttttcggacTGAATGGTAAAATGACAAACCAATTAAACAGGCTGTGGACATCAATGGAAGACACGTGATTTATTGTTCAACGGTGTGGTCTAACTGTTTACAGATGAATTTGTTCCAATATACAGAAGCCTGAACAAAATTTGACATCAGCAACAAAAGTTTGTTCACCAGTTTCGAAGCCCTGCTCATCAGaaagCCCGTAAAGTCTGAGAAAATCGATCCAAACAAGCCTTAATTCTGTCATTAGGTGAGAGGGAGCCGTGGGCTGATTGGCTGCCCGTCTGCTCCATATTCAGAGGTGCTGGATGAGGCAGAGGGCCTGCTGGGTAAAATGCTGCTGTAATCAGGAGCCGGCTGTGCTGCCTGATCAGGTATGAAGTCTGCTTCCACCTTCCTCAAAATCCCTCCTCATCTTCCTCTCGTCTCACTGG
>TCONS_00015584
TTGTAGgacaaacattaaacaaacatTAATGAAAACGTTTTAAAACTGTGCCAGAACTACGTTTGGTATAAATATATTTCTAGTATGTAGTTTCTTATACTTCGAATCGCTAAATTCTGCTTACACATCTCGCTACGAAGTCTCTGCTCTCCACCAGAAGGCAGTTTTACGATGCTTCTCAAGACGTCATTCGTGTCGTCGTTTAAGCCAGGTCCCTGCCACAGTTAGCAGCAACACTGGCCATAATGAAATCATCAGTAATCCCAAAACTCATCTCATCATACCCAAGatgaaagtgcattttctttttttcggacTGAATGGTAAAATGACAAACCAATTAAACAGGCTGTGGACATCAATGGAAGACACGTGATTTATTGTTCAACGGTGTGGTCTAACTGTTTACAGGTAAAGAAATCTGACTTGCCTTTATTGGtgaagtaaataaagtaaattggaTATATGGATTAACAATGC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0048468 cell development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055006 cardiac cell development biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component

KEGG:

id description
ko00910 Nitrogen metabolism
ko00430 Taurine and hypotaurine metabolism
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000099054

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016420 False 1686 lncRNA 0.41 7 32664629 32722335
TCONS_00016419 False 1479 lncRNA 0.39 6 32664629 32722335
TCONS_00015579 False 912 lncRNA 0.38 2 32664833 32692360
TCONS_00015580 False 1115 lncRNA 0.41 3 32664836 32692359
TCONS_00016421 False 944 lncRNA 0.47 6 32676864 32722335
TCONS_00015581 False 1117 lncRNA 0.48 7 32676870 32722335
TCONS_00015582 False 624 lncRNA 0.50 5 32719430 32755070
TCONS_00015584 True 480 lncRNA 0.37 3 32748453 32752202

Neighbor

gene id symbol gene type direction distance location
XLOC_007970 atp11c coding downstream 33110 32507811 ~ 32631519 (-)
XLOC_007969 mcf2a coding downstream 161266 32440639 ~ 32503363 (-)
XLOC_007968 NA coding downstream 229323 32432448 ~ 32435306 (-)
XLOC_007967 fgf13a coding downstream 235940 32183978 ~ 32428689 (-)
XLOC_007966 NA coding downstream 530592 32068804 ~ 32134037 (-)
XLOC_007973 AL590151.1 coding upstream 18602 32773672 ~ 32789588 (-)
XLOC_007974 inppl1b coding upstream 38202 32793272 ~ 32824408 (-)
XLOC_007975 ube2a coding upstream 104360 32859430 ~ 32866427 (-)
XLOC_007976 si:rp71-46j2.7 coding upstream 111678 32866748 ~ 32876280 (-)
XLOC_007977 slc25a5 coding upstream 126555 32881625 ~ 32884138 (-)
XLOC_007641 CU855896.1 misc downstream 30256789 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 30257198 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 30257557 2406945 ~ 2407072 (-)
XLOC_007963 NA non-coding downstream 775369 31881282 ~ 31889260 (-)
XLOC_007962 AL929434.2 non-coding downstream 803802 31860750 ~ 31860827 (-)
XLOC_007961 AL929434.3 non-coding downstream 804159 31860408 ~ 31860470 (-)
XLOC_007979 BX247946.1 non-coding upstream 158610 32913680 ~ 32918834 (-)
XLOC_007983 CR812836.1 non-coding upstream 293449 33048519 ~ 33050080 (-)
XLOC_007999 NA non-coding upstream 709878 33464948 ~ 33467691 (-)
XLOC_008004 NA non-coding upstream 911012 33666082 ~ 33778252 (-)

Expression


Co-expression Network