XLOC_007977 (slc25a5)


Basic Information

Item Value
gene id XLOC_007977
gene name slc25a5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 32881625 ~ 32884138 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015594
CTCGCGAGACGAACCTTTTAAAAACGTCGTCTCAACTTTTCAATCGGCCATTTCGAATCAGCCGGCATTCCACGCTAGTCCTGCGGCAGAGCGGGATTGACCTCTTCAAGCGACACCTCTCCAAGAACATCCAACAATGAGTGAGACCGCCATCTCCTTCGCCAAGGACTTCTTGGCCGGTGGTATTGCCGCTGCCATCTCTAAAACCGCCGTGGCCCCCATTGAGAGAGTCAAACTGCTGCTTCAGGTGCAACATGCTAGCAAACAGATTACAGCAGATAAGCAGTACAAGGGCATTATGGACTGCGTGGTGCGTATCCCCAAGGAGCAGGGCTTCCTGTCGTTCTGGAGAGGAAACTTGGCCAACGTCATCAGATACTTCCCCACACAGGCCCTCAACTTTGCTTTCAAGGACAAGTACAAGAAGGTCTTCCTTGATGGTGTGGACAAGCGCACCCAGTTTTGGAGGTACTTCGCTGGTAACCTGGCTTCAGGTGGTGCTGCTGGTGCCACATCCCTCTGCTTCGTGTATCCCCTTGACTTCGCAAGAACCCGTCTTGCTGCCGATGTCGGAAAGGCTGGAGCAGAAAGAGAGTTCAGTGGGCTGGGTAACTGCTTGGTAAAGATCTCCAAATCTGATGGCATCAAGGGTCTGTACCAGGGCTTCAACGTGTCCGTGCAGGGTATCATCATTTACAGAGCTGCCTACTTCGGCATTTATGACACAGCCAAGGGTATGCTGCCCGATCCCAAGAACACCCATATTGTTGTGAGCTGGATGATTGCTCAGAGTGTGACTGCTGTTGCTGGTCTTGCTTCCTACCCCTTCGACACAGTGCGTCGTCGTATGATGATGCAGTCTGGACGTAAAGGAGCCGACATCATGTACAGTGGCACAATTGACTGCTGGAGGAAGATCGCACGTGATGAGGGTGGCAAGGCTTTCTTCAAGGGAGCCTGGTCCAACGTTCTCAGAGGCATGGGTGGCGCCTTTGTGCTGGTCTTGTATGATGAGCTGAAGAAGGTCATTTAAATGTTTTCCTGTCCACCATTCAATGTGAGATGTTTAACTGTAACATATCTTGTACATTTGGAAGGACTCTCAAATTCCGCCTTATTTATAGGGACCAACTAGTATGTCAGTACTAGTTGTACTGGGGGAAATTTGTTTTGCGGTTTTTCTTTTGCCCCGTTCATCTCTCCTTTTTGTTCCCCTCACCGTACTGTCATTCccagaaagaaagaacaaaagaatgcCAGGTACTAAAATCTACCTGTTTTCCAGCCGGTCTGTTTTTAGTCTTCATCAATAAAGACCCACTGAATGAACCTACA
>TCONS_00015595
TTTCGAATCAGCCGGCATTCCACGCTAGTCCTGCGGCAGAGCGGGATTGACCTCTTCAAGCGACACCTCTCCAAGAACATCCAACAATGAGTGAGACCGCCATCTCCTTCGCCAAGGACTTCTTGGCCGGTGGTATTGCCGCTGCCATCTCTAAAACCGCCGTGGCCCCCATTGAGAGAGTCAAACTGCTGCTTCAGGTGCAACATGCTAGCAAACAGATTACAGCAGATAAGCAGTACAAGGGCATTATGGACTGCGTGGTGCGTATCCCCAAGGAGCAGGGCTTCCTGTCGTTCTGGAGAGGAAACTTGGCCAACGTCATCAGATACTTCCCCACACAGGCCCTCAACTTTGCTTTCAAGGACAAGTACAAGAAGGTCTTCCTTGATGGTGTGGACAAGCGCACCCAGTTTTGGAGGTACTTCGCTGGTAACCTGGCTTCAGGTGGTGCTGCTGGTGCCACATCCCTCTGCTTCGTGTATCCCCTTGACTTCGCAAGAACCCGTCTTGCTGCCGATGTCGGAAAGGCTGGAGCAGAAAGAGAGTTCAGTGGGCTGGGTAACTGCTTGGTAAAGATCTCCAAATCTGATGGCATCAAGGGTCTGTACCAGGGCTTCAACGTGTCCGTGCAGGGTATCATCATTTACAGAGCTGCCTACTTCGGCATTTATGACACAGCCAAGGGTGAGTCCATGATGCATTTAAGGTGTCCTCAATGGTATGTGCTGTTGTTGCATTGGTTACATCTGCATTTTTGTCTTTAGGTATGCTGCCCGATCCCAAGAACACCCATATTGTTGTGAGCTGGATGATTGCTCAGAGTGTGACTGCTGTTGCTGGTCTTGCTTCCTACCCCTTCGACACAGTGCGTCGTCGTATGATGATGCAGTCTGGAC

Function

symbol description
slc25a5 Predicted to enable ATP:ADP antiporter activity. Predicted to act upstream of or within mitochondrial ADP transmembrane transport and mitochondrial ATP transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including bone element; eye; female organism; integument; and male organism. Orthologous to several human genes including SLC25A5 (solute carrier family 25 member 5).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020419-9 Predicted to enable ATP:ADP antiporter activity. Predicted to act upstream of or within mitochondrial ADP transmembrane transport and mitochondrial ATP transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including bone element; eye; female organism; integument; and male organism. Orthologous to several human genes including SLC25A5 (solute carrier family 25 member 5).

Ensembl:

ensembl_id ENSDARG00000092553

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015594 False 1335 mRNA 0.50 4 32881625 32884138
TCONS_00015595 True 896 lncRNA 0.52 2 32882178 32884088

Neighbor

gene id symbol gene type direction distance location
XLOC_007976 si:rp71-46j2.7 coding downstream 5345 32866748 ~ 32876280 (-)
XLOC_007975 ube2a coding downstream 15198 32859430 ~ 32866427 (-)
XLOC_007974 inppl1b coding downstream 57217 32793272 ~ 32824408 (-)
XLOC_007973 AL590151.1 coding downstream 92037 32773672 ~ 32789588 (-)
XLOC_007971 NA coding downstream 126555 32664629 ~ 32755070 (-)
XLOC_007978 slc25a43 coding upstream 593 32884731 ~ 32893785 (-)
XLOC_007979 BX247946.1 coding upstream 29542 32913680 ~ 32918834 (-)
XLOC_007980 chic1 coding upstream 67704 32951842 ~ 32959851 (-)
XLOC_007981 cdx4 coding upstream 77580 32961718 ~ 32965169 (-)
XLOC_007982 kdrl coding upstream 99631 32983769 ~ 33044955 (-)
XLOC_007641 CU855896.1 misc downstream 30473785 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 30474194 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 30474553 2406945 ~ 2407072 (-)
XLOC_007968 NA non-coding downstream 446319 32432448 ~ 32435306 (-)
XLOC_007966 NA non-coding downstream 747588 32068804 ~ 32134037 (-)
XLOC_007963 NA non-coding downstream 992365 31881282 ~ 31889260 (-)
XLOC_007983 CR812836.1 non-coding upstream 164381 33048519 ~ 33050080 (-)
XLOC_007999 NA non-coding upstream 580810 33464948 ~ 33467691 (-)
XLOC_008004 NA non-coding upstream 781944 33666082 ~ 33778252 (-)
XLOC_008005 NA non-coding upstream 837904 33722042 ~ 33744753 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G116014 slc25a5,LOC104931197,LOC101464643,LOC102200398,LOC106515500,LOC103395576,LOC108430428 unknown NC_047601.1 CM018547.1 16068735 ~ 16071362 (-)
mexican tetra (Astyanax mexicanus) G212365 slc25a5,LOC100712014,LOC108430428,LOC106515506,LOC107658113,LOC102232717,LOC107560428 non-coding NC_035920.1 CM008323.1 45291193 ~ 45312065 (+)