Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_007981 |
| gene name | cdx4 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007125.7 |
| NCBI id | CM002898.2 |
| chromosome length | 52660232 |
| location | 32961718 ~ 32965169 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| cdx4 | Enables DNA binding activity and chromatin binding activity. Acts upstream of or within several processes, including animal organ development; anterior/posterior pattern specification; and embryonic foregut morphogenesis. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; endoderm; germ ring; mesoderm; and presumptive mesoderm. Orthologous to human CDX4 (caudal type homeobox 4). |
| id | name | namespace |
|---|---|---|
| GO:0030097 | hemopoiesis | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0036342 | post-anal tail morphogenesis | biological_process |
| GO:0048793 | pronephros development | biological_process |
| GO:0031016 | pancreas development | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0021903 | rostrocaudal neural tube patterning | biological_process |
| GO:0021906 | hindbrain-spinal cord boundary formation | biological_process |
| GO:0010468 | regulation of gene expression | biological_process |
| GO:0009948 | anterior/posterior axis specification | biological_process |
| GO:0048617 | embryonic foregut morphogenesis | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0048384 | retinoic acid receptor signaling pathway | biological_process |
| GO:0003311 | pancreatic D cell differentiation | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-330 | Enables DNA binding activity and chromatin binding activity. Acts upstream of or within several processes, including animal organ development; anterior/posterior pattern specification; and embryonic foregut morphogenesis. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; endoderm; germ ring; mesoderm; and presumptive mesoderm. Orthologous to human CDX4 (caudal type homeobox 4). |
| ensembl_id | ENSDARG00000036292 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00015599 | True | 1638 | mRNA | 0.43 | 3 | 32961718 | 32965169 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_007980 | chic1 | coding | downstream | 1867 | 32951842 ~ 32959851 (-) |
| XLOC_007979 | BX247946.1 | coding | downstream | 42884 | 32913680 ~ 32918834 (-) |
| XLOC_007978 | slc25a43 | coding | downstream | 67933 | 32884731 ~ 32893785 (-) |
| XLOC_007977 | slc25a5 | coding | downstream | 77580 | 32881625 ~ 32884138 (-) |
| XLOC_007976 | si:rp71-46j2.7 | coding | downstream | 85438 | 32866748 ~ 32876280 (-) |
| XLOC_007982 | kdrl | coding | upstream | 18600 | 32983769 ~ 33044955 (-) |
| XLOC_007983 | CR812836.1 | coding | upstream | 83350 | 33048519 ~ 33050080 (-) |
| XLOC_007984 | dlg3 | coding | upstream | 105115 | 33070284 ~ 33177997 (-) |
| XLOC_007985 | si:dkey-31j3.11 | coding | upstream | 230450 | 33195619 ~ 33218418 (-) |
| XLOC_007986 | gdpd2 | coding | upstream | 254201 | 33219370 ~ 33265068 (-) |
| XLOC_007641 | CU855896.1 | misc | downstream | 30553878 | 2407736 ~ 2407840 (-) |
| XLOC_007640 | CU855896.2 | misc | downstream | 30554287 | 2407328 ~ 2407431 (-) |
| XLOC_007639 | CU855896.3 | misc | downstream | 30554646 | 2406945 ~ 2407072 (-) |
| XLOC_007973 | AL590151.1 | non-coding | downstream | 172130 | 32773672 ~ 32789588 (-) |
| XLOC_007971 | NA | non-coding | downstream | 206648 | 32664629 ~ 32755070 (-) |
| XLOC_007968 | NA | non-coding | downstream | 526412 | 32432448 ~ 32435306 (-) |
| XLOC_007966 | NA | non-coding | downstream | 827681 | 32068804 ~ 32134037 (-) |
| XLOC_007999 | NA | non-coding | upstream | 499779 | 33464948 ~ 33467691 (-) |
| XLOC_008004 | NA | non-coding | upstream | 700913 | 33666082 ~ 33778252 (-) |
| XLOC_008005 | NA | non-coding | upstream | 756873 | 33722042 ~ 33744753 (-) |
| XLOC_008009 | FP016208.2 | non-coding | upstream | 909889 | 33875058 ~ 33898589 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000000_11650257_11652811 | CDX1, CDX4 | coding | CI01000000 | null | 11649904 ~ 11654726 (-) |
