XLOC_007985 (si:dkey-31j3.11)


Basic Information

Item Value
gene id XLOC_007985
gene name si:dkey-31j3.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 33195619 ~ 33218418 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015608
CACCTCTCTCTGGCAAACGGGTGTTTTCCGATAAACCGGCGAGACAAATTTCAGGTATAGCTATACCGTTAGTGATTATTATTTACCATACATTATCTTTGATTGCCAAAACGTTATTAAATCACGTTTGATTTGCTCTCAACTTAAATTGATAAAACTGTATGTTTCTTCTCTGAAAGTCACGCTTGTTATTCAACGCCATCGTTAATTATGCGCTGTTTACATGAGGATTAAGGATGAGTAAGAGACCCTGTTAGCCTGATACTACAGACCGCCCTTCAGTCCCCAATGCTTCCCCTCCAAACTTTCCAATAGGCAGATAACGGGAAGCTTCACACTCTCACCACTTTCACAGCCCGCATCTCCTGCCAACTGGAGTAACTTCTGTTCCCGTCTTTAATACTAAAACTTCCCCGAGAAACAGTACCGTCATGGGGTGGAAAATTACGGCAAAACTTTTCAAAACTTAACTGGTCGGAGACAACTGGAAAGTGACAGCTGAACTGAGGAGGAGGTTAAAGCGTTATTATTTGAACTGGATTTACAGGATTACGTTAACAGTCTTCACATCATGGTCCATAAATATGATACCAAAAGAGCAGCAGGTCTACTGAAACAGTACCAGGCAAATCTAACCAGTCCTGAGGAGCAGGCCCTGAAGAGCAGCGTGGAAAAGGTTTCCACCATCTTCGGCAGTCATCTTTTTCAGGCTCTGCTGGATATTCAGGAATGCTACGAGGTAACCCTGCAAATGAATGCAGCACAGAATGGAGTTAAAGACAGCAGCTCAGTGGACACACTGGAGACATCAGGTGAAGAGGGTGTGTCACGTGTGCGTGTGACCAGCAGGAGGAGCTCTCAGAAGCTGGAGAGAGTGGCTGGACTAGTAAGCCGCTCTCATGTAGAGACACCAAAGGTTAGTGGCTGCTTTTTTTCTGTACAAAAAAATAGTGGATTCCTTACATATAACAGCTGTGTAGGAGCTGAACAGCTAACAGTTAAGGACAGCCTGACGTCTCTAAGATAAGTGTAAGAGAGTTTTAGACTGTTGATAAAACCGTCATCTGTGT
>TCONS_00016060
CACCTCTCTCTGGCAAACGGGTGTTTTCCGATAAACCGGCGAGACAAATTTCAGGTATAGCTATACCGTTAGTGATTATTATTTACCATACATTATCTTTGATTGCCAAAACGTTATTAAATCACGTTTGATTTGCTCTCAACTTAAATTGATAAAACTGTATGTTTCTTCTCTGAAAGTCACGCTTGTTATTCAACGCCATCGTTAATTATGCGCTGTTTACATGAGGATTAAGGATGAGTAAGAGACCCTGTTAGCCTGATACTACAGACCGCCCTTCAGTCCCCAATGCTTCCCCTCCAAACTTTCCAATAGGCAGATAACGGGAAGCTTCACACTCTCACCACTTTCACAGCCCGCATCTCCTGCCAACTGGAGTAACTTCTGTTCCCGTCTTTAATACTAAAACTTCCCCGAGAAACAGTACCGTCATGGGGTGGAAAATTACGGCAAAACTTTTCAAAACTTAACTGGTCGGAGACAACTGGAAAGTGACAGCTGAACTGAGGAGGAGGTTAAAGCGTTATTATTTGAACTGGATTTACAGGATTACGTTAACAGTCTTCACATCATGGTCCATAAATATGATACCAAAAGAGCAGCAGGTCTACTGAAACAGTACCAGGCAAATCTAACCAGTCCTGAGGAGCAGGCCCTGAAGAGCAGCGTGGAAAAGGTTTCCACCATCTTCGGCAGTCATCTTTTTCAGGCTCTGCTGGGTGAGGTTTGTTTCTGTGTAAACTCTAATGGCTCTCAAAGCAAATAATGATTAACTGTCATTATTTAGGGCTGTTCCACTT

Function

symbol description
si:dkey-31j3.11 Predicted to be involved in several processes, including establishment or maintenance of epithelial cell apical/basal polarity; receptor clustering; and receptor localization to synapse. Predicted to be active in several cellular components, including basolateral plasma membrane; neuromuscular junction; and postsynaptic density membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103615

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015608 False 1070 mRNA 0.44 4 33195619 33218418
TCONS_00016060 True 800 lncRNA 0.42 2 33215366 33218418

Neighbor

gene id symbol gene type direction distance location
XLOC_007984 dlg3 coding downstream 17622 33070284 ~ 33177997 (-)
XLOC_007983 CR812836.1 coding downstream 145539 33048519 ~ 33050080 (-)
XLOC_007982 kdrl coding downstream 150664 32983769 ~ 33044955 (-)
XLOC_007981 cdx4 coding downstream 230450 32961718 ~ 32965169 (-)
XLOC_007980 chic1 coding downstream 235768 32951842 ~ 32959851 (-)
XLOC_007986 gdpd2 coding upstream 952 33219370 ~ 33265068 (-)
XLOC_007987 stard14 coding upstream 51969 33270387 ~ 33278084 (-)
XLOC_007988 rab41 coding upstream 62300 33280718 ~ 33297318 (-)
XLOC_007989 sept6 coding upstream 79363 33297781 ~ 33328031 (-)
XLOC_007990 rpl39 coding upstream 113355 33331773 ~ 33348221 (-)
XLOC_007641 CU855896.1 misc downstream 30787779 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 30788188 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 30788547 2406945 ~ 2407072 (-)
XLOC_007979 BX247946.1 non-coding downstream 276785 32913680 ~ 32918834 (-)
XLOC_007973 AL590151.1 non-coding downstream 406031 32773672 ~ 32789588 (-)
XLOC_007971 NA non-coding downstream 440549 32664629 ~ 32755070 (-)
XLOC_007968 NA non-coding downstream 760313 32432448 ~ 32435306 (-)
XLOC_007999 NA non-coding upstream 246530 33464948 ~ 33467691 (-)
XLOC_008004 NA non-coding upstream 447664 33666082 ~ 33778252 (-)
XLOC_008005 NA non-coding upstream 503624 33722042 ~ 33744753 (-)
XLOC_008009 FP016208.2 non-coding upstream 656640 33875058 ~ 33898589 (-)
XLOC_008017 NA non-coding upstream 1125664 34344082 ~ 34490887 (-)

Expression


Co-expression Network