XLOC_007988 (rab41)


Basic Information

Item Value
gene id XLOC_007988
gene name rab41
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 33280718 ~ 33297318 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015615
acagtgtgtccttcGTCCACGCACGACAATAACATTTAGAAAGCTGTTGTTCAGTATATTCGATAAACATGTCCACTACGACCGGTGGCGGAGAGTTCGGCAACCCTCTGCGGAAATTTAAGCTGGTTTTCCTGGGCGAGCAAAgcgTGGGCAAAACTTCACTTATCACCAGGTTTATGTATGACAGCTTTGATAATACTTATCAGGCAACTATTGGTATAGACTTTTTGTCAAAAACCATGTACCTGGAAGATCGCACGGTTCGGCTCCAGCTGTGGGACACTGCAGGGCAGGAGCGCTTCCGCAGCCTCATTCCCAGCTACATCCGAGACTCCACTATTGCTGTGGTGGTCTATGACATCACCAATCTTAACTCTTTCCAGCAAACCTCAAAGTGGATAGATGATGTCAGAACAGAGAGAGGAAGTGATGTTATTATCATGTTGGTTGGCAACAAGACAGACCTGGGTGATAAAAGGCAAGTGTCAGTAGAGGCAGCAGAGAAAAAAGCTCGGGAACTGGGGGTGATGTACATAGAGACCAGCGCCAAAGCTGGCTATAACGTCAAACAGCTGTTTCGTCGTGTTGCTGCTGCTTTGCCTGGAATGGATAGTACACCAGAGAAGAGCAAAGAGGACATGATCGACATCAAACTGGAGAAGCCTCCGGAGTTGCCCGTTACCGAAAGCAGCTGCTCGTGCTAGTAAACCACCCTCATCCCCCAGCAGGCCCTACGCCCCCCCTCCCACTCAAccccctctcacacacacacacagcttgccTCTCAGTGGTCACTCACTCCTCTCACGGCCCCATGTCACGAGCCAAGAACCCTTTCTTTCTCTTCGACTCGGTGACTTCTCAGAGTAACCGTGTGGATGTGCTACAACTCTGAATTCAAACGGATTCCAAAACATGTATAATAATGGGGGGAAAACGTAAATCAAAGCATATTTTAAATGCGAAAAATCTGTTCTGGCTGCATGGCATTAAATGGGACTGCAGACTGACATAAGCTCATATGCTCTTGAGTTTTCACACATCAGTGCTGTCATAGTCATTGTGAAGTGTTTCAGAGCCTGGGCTGATGTCCTCTTGTTTTTTTAAGGGCCTTTTTAAGAAATTACACTGGAGGAAAAGGTTGAGATTGTTGTGTTGAGAGGCTGTAAACTTCTGTTAccaagttgttttgttttttaaacacactATTTTGTTGGCAGAAGTTATTTAATCTGATTTTGAAAtggtcatatcattaatattctgTATaattgggtgtttttttttgtgttataagCGGTATTAGGGACCAGCTATCAGTTAAAGGTCTTTTTGTTTCAAGAAAGATTCACGTTCGGCCAATAATTGAGCAGTTTTGTTTACGAGAGAGGTCTCATTCGAGAACAGGCTGATTTTATATTCGGAGGGTTGCATGGAGGTCGAATGTATTGAGTTGTGAGGGGGGGGATTTTGGATTTAACATTCTTAGAAAAGGGaaaaattgctttgtaaacatatttttatttcatcaAAACTAAAAGCCTAAGATATTTAATGACTTATCCACAACTTTAATGGTAAAAACAAACCCTGTATGTACTAACAAAACTATGGTAACTGAGCTTGGATATGGAAAGCATCAGCAATTCACACTAATTCCACTCATCATTTTCTGCCTTGTTTTTGCTGTGCGAGTGTAGGAGCAGCATGCAGTTTAGAGACGGTTTAACACAAAATTGCCTTGCTTGTTTTGTTGTCATAGTGCACCAGATCAGGCCGCAGCGCTGTGCTTTGCTCCAGCCTGTTAACATTGCATAGAGCTAACGAGTTTTTGAGTTTGGGATGTTTCGATTTCCTCTTTCGACACGGCTATCGCTTGGTGTACAGACATGTCTTAGTATTGCTTGTCGTAAGACTGTTGGtttcatgtgtttatttattatctcACTAGTTAGTGAAAGTGTGTCGTATGCTTGACAGGAATGGCAGCAATGTGCAGGAATCAAAGGTTGATGTGTAATTTGCATTGCTGCCTGGCTACTGTATCGCAAAAACCTGCTCATGTCACTCTCCTCTTGCCACAAGTCCCATCTGTAACGCTGGGTTTCTTCAGTATAGCTTGAGTGGGCTTTTATTTGCTGGCGGAAACCCCTCAGCACTGTCGCTTTTCCTCTCATTCGACGGCAAATCCTGAAAAACAAGGGCATCAGGTGCGTTTTAAACGTTAACATTTAATATGGTTTGATTATGTAAGAATTGACATAAGAGTGAAAACCCTCCTGAACAGCTCTGTCACTCGTCACTGACTGAATACTCAGCTGTGTGCTCTTCTAAAGTGTGTTGGTCTGTTTGAAATACGCTGTCTACTAGTGTTTAGCAAAGTTTGTGTGAACaaagtactattattattattatatgctgtaaaaaatgGAAGGTTAAAGAGACACCAAATGTATCACATGAATAAAAGATATTTCACCAA
>TCONS_00015616
ATCCGCTATCGGCGCTCCGTCACTggactgtacagtgtgtccttcGTCCACGCACGACAATAACATTTAGAAAGCTGTTGTTCAGTATATTCGATAAACATGTCCACTACGACCGGTGGCGGAGAGTTCGGCAACCCTCTGCGGAAATTTAAGCTGGTTTTCCTGGGCGAGCAAAgcgTGGGCAAAACTTCACTTATCACCAGGTTTATGTATGACAGCTTTGATAATACTTATCAGGCAACTATTGGTATAGACTTTTTGTCAAAAACCATGTACCTGGAAGATCGCACGATTCGGCTACAGCTGTGGGACACTGCTGGGCAGGAACGCTTCCGTAGCCTCATTCCCAGTTACATCCGAGACTCCGCAGCCGCAGTGGTGGTCTATGATATAGCAAATCTTAACTCTTTCCAGCAAACCTCAAAGTGGATAGATGATGTCAGAACAGAGAGAGGAAGTGATGTTATTATCATGTTGGTTGGCAACAAGACAGACCTGGGTGATAAAAGGCAAGTGTCAGTAGAGGCAGCAGAGAAAAAAGCTCGGGAACTGGGGGTGATGTACATAGAGACCAGCGCCAAAGCTGGCTATAACGTCAAACAGCTGTTTCGTCGTGTTGCTGCTGCTTTGCCTGGAATGGATAGTACACCAGAGAAGAGCAAAGAGGACATGATCGACATCAAACTGGAGAAGCCTCCGGAGTTGCCCGTTACCGAAAGCAGCTGCTCGTGCTAGTAAACCACCCTCATCCCCCAGCAGGCCCTACGCCCCCCCTCCCACTCAAccccctctcacacacacacacagcttgccTCTCAGTGGTCACTCACTCCTCTCACGGCCCCATGTCACGAGCCAAGAACCCTTTCTTTCTCTTCGACTCGGTGACTTCTCAGAGTAACCGTGTGGATGTGCTACAACTCTGAATTCAAACGGATTCCAAAACATGTATAATAATGGGGGGAAAACGTAAATCAAAGCATATTTTAAATGCGAAAAATCTGTTCTGGCTGCATGGCATTAAATGGGACTGCAGACTGACATAAGCTCATATGCTCTTGAGTTTTCACACATCAGTGCTGTCATAGTCATTGTGAAGTGTTTCAGAGCCTGGGCTGATGTCCTCTTGTTTTTTTAAGGGCCTTTTTAAGAAATTACACTGGAGGAAAAGGTTGAGATTGTTGTGTTGAGAGGCTGTAAACTTCTGTTAccaagttgttttgttttttaaacacactATTTTGTTGGCAGAAGTTATTTAATCTGATTTTGAAAtggtcatatcattaatattctgTATaattgggtgtttttttttgtgttataagCGGTATTAGGGACCAGCTATCAGTTAAAGGTCTTTTTGTTTCAAGAAAGATTCACGTTCGGCCAATAATTGAGCAGTTTTGTTTACGAGAGAGGTCTCATTCGAGAACAGGCTGATTTTATATTCGGAGGGTTGCATGGAGGTCGAATGTATTGAGTTGTGAGGGGGGGGATTTTGGATTTAACATTCTTAGAAAAGGGaaaaattgctttgtaaacatatttttatttcatcaAAACTAAAAGCCTAAGATATTTAATGACTTATCCACAACTTTAATGGTAAAAACAAACCCTGTATGTACTAACAAAACTATGGTAACTGAGCTTGGATATGGAAAGCATCAGCAATTCACACTAATTCCACTCATCATTTTCTGCCTTGTTTTTGCTGTGCGAGTGTAGGAGCAGCATGCAGTTTAGAGACGGTTTAACACAAAATTGCCTTGCTTGTTTTGTTGTCATAGTGCACCAGATCAGGCCGCAGCGCTGTGCTTTGCTCCAGCCTGTTAACATTGCATAGAGCTAACGAGTTTTTGAGTTTGGGATGTTTCGATTTCCTCTTTCGACACGGCTATCGCTTGGTGTACAGACATGTCTTAGTATTGCTTGTCGTAAGACTGTTGGtttcatgtgtttatttattatctcACTAGTTAGTGAAAGTGTGTCGTATGCTTGACAGGAATGGCAGCAATGTGCAGGAATCAAAGGTTGATGTGTAATTTGCATTGCTGCCTGGCTACTGTATCGCAAAAACCTGCTCATGTCACTCTCCTCTTGCCACAAGTCCCATCTGTAACGCTGGGTTTCTTCAGTATAGCTTGAGTGGGCTTTTATTTGCTGGCGGAAACCCCTCAGCACTGTCGCTTTTCCTCTCATTCGACGGCAAATCCTGAAAAACAAGGGCATCAGGTGCGTTTTAAACGTTAACATTTAATATGGTTTGATTATGTAAGAATTGACATAAGAGTGAAAACCCTCCTGAACAGCTCTGTCACTCGTCACTGACTGAATACTCAGCTGTGTGCTCTTCTAAAGTGTGTTGGTCTGTTTGAAATACGCTGTCTACTAGTGTTTAGCAAAGTTTGTGTGAACaaagtactattattattattatatgctgtaaaaaatgGAAGGTTAAAGAGACACCAAATGTATCACATGAATAAAAGATATTTCACCAA
>TCONS_00015617
GCTATCGGCGCTCCGTCACTggactgtacagtgtgtccttcGTCCACGCACGACAATAACATTTAGAAAGCTGTTGTTCAGTATATTCGATAAACATGTCCACTACGACCGGTGGCGGAGAGTTCGGCAACCCTCTGCGGAAATTTAAGCTGGTTTTCCTGGGCGAGCAAAgcgTGGGCAAAACTTCACTTATCACCAGGTTTATGTATGACAGCTTTGATAATACTTATCAGGCAACTATTGGTATAGACTTTTTGTCAAAAACCATGTACCTGGAAGATCGCACGGTTCGGCTCCAGCTGTGGGACACTGCAGGGCAGGAGCGCTTCCGCAGCCTCATTCCCAGCTACATCCGAGACTCCACTATTGCTGTGGTGGTCTATGACATCACCAATCTTAACTCTTTCCAGCAAACCTCAAAGTGGATAGATGATGTCAGAACAGAGAGAGGAAGTGATGTTATTATCATGTTGGTTGGCAACAAGACAGACCTGGGTGATAAAAGACAGATTACCACGGAGGAGGGCGAGCAGAGGGCTAAGGAACTGAATGTCATGTTCATTGAAACCAGCGCAAAGACTGGCTACAATGTCAAACAGCTGTTTCGTCGTGTTGCTGCTGCTTTGCCTGGAATGGATAGTACACCAGAGAAGAGCAAAGAGGACATGATCGACATCAAACTGGAGAAGCCTCCGGAGTTGCCCGTTACCGAAAGCAGCTGCTCGTGCTAGTAAACCACCCTCATCCCCCAGCAGGCCCTACGCCCCCCCTCCCACTCAAccccctctcacacacacacacagct

Function

symbol description
rab41 Predicted to enable GTPase activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Orthologous to human RAB41 (RAB41, member RAS oncogene family).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0012505 endomembrane system cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040426-2686 Predicted to enable GTPase activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Orthologous to human RAB41 (RAB41, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000029885

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015615 False 2482 mRNA 0.43 8 33280718 33297287
TCONS_00015616 False 2513 mRNA 0.43 8 33280718 33297318
TCONS_00015617 True 805 mRNA 0.50 8 33282422 33297314

Neighbor

gene id symbol gene type direction distance location
XLOC_007987 stard14 coding downstream 2634 33270387 ~ 33278084 (-)
XLOC_007986 gdpd2 coding downstream 15650 33219370 ~ 33265068 (-)
XLOC_007985 si:dkey-31j3.11 coding downstream 62300 33195619 ~ 33218418 (-)
XLOC_007984 dlg3 coding downstream 102721 33070284 ~ 33177997 (-)
XLOC_007983 CR812836.1 coding downstream 230638 33048519 ~ 33050080 (-)
XLOC_007989 sept6 coding upstream 463 33297781 ~ 33328031 (-)
XLOC_007990 rpl39 coding upstream 34455 33331773 ~ 33348221 (-)
XLOC_007991 upf3b coding upstream 42004 33339322 ~ 33351103 (-)
XLOC_007992 pimr117 coding upstream 57845 33355163 ~ 33360344 (-)
XLOC_007993 pimr120 coding upstream 67812 33365130 ~ 33370378 (-)
XLOC_007641 CU855896.1 misc downstream 30872878 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 30873287 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 30873646 2406945 ~ 2407072 (-)
XLOC_007979 BX247946.1 non-coding downstream 361884 32913680 ~ 32918834 (-)
XLOC_007973 AL590151.1 non-coding downstream 491130 32773672 ~ 32789588 (-)
XLOC_007971 NA non-coding downstream 525648 32664629 ~ 32755070 (-)
XLOC_007968 NA non-coding downstream 845412 32432448 ~ 32435306 (-)
XLOC_007999 NA non-coding upstream 167630 33464948 ~ 33467691 (-)
XLOC_008004 NA non-coding upstream 368764 33666082 ~ 33778252 (-)
XLOC_008005 NA non-coding upstream 424724 33722042 ~ 33744753 (-)
XLOC_008009 FP016208.2 non-coding upstream 577740 33875058 ~ 33898589 (-)
XLOC_008017 NA non-coding upstream 1046764 34344082 ~ 34490887 (-)

Expression


Co-expression Network