XLOC_008017


Basic Information

Item Value
gene id XLOC_008017
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 34344082 ~ 34490887 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016061
GTGAAAGACAATGGAGGGACGCGCAAGTGAGGATAATCCCACTAATTGGACATCGACATCATCAAGTATACAAGTTGCCTGAAACCCAAATTCCCACACCTACTTGTCACAAAACAAACTCGTATTAAACCATTATATTGCGCTCGGAGAACTAACCTAAGTGGAGCCGTCGTGCCATAAACGCCCGCAGAAAACTTTTATGGAGTAACAAACTGCAATGACATCGCTTATTCTCACGTCTGAAAGCACGAAATTAACAAATAAGTGCAATAATAAGAAAGAAATAATCATTAAAACTGGCTAGAAGACCATCACCACAGCGTTTAATGGTATCATGACTCACCTTGCTGCACAGATGATCCATTTTGACGAGTCACTCACAGAAGCTCAGAAATCATACAAAAACCAAATTCATGGATTTTTAATCTCCACCTTGGATGCACAAGTCAAGATAGGAAAAGTGCATCTGGAAGAGCAGAGCTGGAGTTTCTGCATCTGGCCGAGAGGAATCCCAGAGAGTTTTGGTGAAAAGTGATGATCTCTGTCTGACGATGGTGGAAGTTTTGTCCTGCTTTCTGATGGAGCTGAAGGGAAAATCCAGCTTTGATAATCACAAGCAAACAGGAATCCTGCAGAGCCTGTTGGGCCAGACCACCATGTGTGAGGACAAGACAAGCACAACCAGGTCCATCTATCTC
>TCONS_00016427
CAAAAACCAAATTCATGGATTTTTAATCTCCACCTTGGATGCACAAGTCAAGTCTGGACCTCCTGCTGGAGGAGGAGCAAGCTACCAAACAGATGCACTGGGTGGAGCGCCATTCAGCCTCCCACCACCAGACCTAAACATGCAGCTGATGGAGGCAGAAATGGGTCAAGATGATGTTACCTGGTGCTTCAGCAGAACTTTTTAGACCAGAGTTTCCTGCGGAGAAATGGATTAGGCAATTACACAGCTGAGGCCGGGCTCTATCTCATAAGCCTGTTAGCTTTGCCTGTGCACAGGTTTCTGCAGATAAGTGACCATTCTTCTTTTTCCACAGTAAGTGCTGTCAGTGCTACAAGGAGTCTTACTCTGTACACCCAACTCTTGGGTTTATTTACAGCAGTTCAGGTGCTTCAGTCATTTTTGAGTTTGTACGCATTTTTAATAGACAGAAAAAATGTTCTGTGATTTATTTACCctgatttaatatatatatgtgtatctaTATATAGTTAAAGACTTTTTTGCAGTCATCATTGAAACAATTGGCTGTTAAACAttgcaaatgacaaaaaatacatggAGAATGTCTGAGCAGGATTTTTGCAGGCATTATAAGTACTGATTTCTTATCATGATCAGCCAGTACTTTCCCACTTCCAGTAATTCAAGTTTTATATAAAGATAGAACATGAATGCAACCTTTAAAAGTTTTTCTGGCTAAACAGAAAATATTATGTCGGTCCATAATGTTAGTGTACAGTAGCTCAAGTTATGCAGAAACTGAATCACCGAAGCTGTGAAATACTAAACAATACTAAACAATCATAAGCAGTATTTTCAGCTTTAATCAAGGTAGTAATGCTTGTGATTGGCTGCAGTGTTCATATGCTCAAAGTGTGTGTGATTGGTATATgaccatgttttgttttgtaagaaatagactaaaatgaaaaaaaaaagctgtactCTAAAATCATTCATACCACAACTTACCAGCTGTAATTATTGTGCCATTTGCAATAGATGAGTAACAACAAGACACGAAAGTGCTATTTAAGTGAACTGGTTTATTATAAACAAgttttatattaatacatttttatggaAAAATTAAGTTTCACACAAAAGTAGTAAGAAATAAGACAATGAACAAATAAGACAATATGAGACAAATGAGACAATAAAACAAAGTTTAACAGACATATGCAAGACAAATGCAAAGGACTgtttcaaacaaaataaaacaaaaagtaaacctTCAACGTCTTAGACATCGATCTTACCTACTCCCTCCTTCCAAAGCAAATCTTACAAGTGTGGCACAAATCCGTAACCTAGTCTGTATAACTAACTAAAGGAATGCTTTGTGTGCGCCATGTACATCACTACATCACGTGATAGAACTTACCTATTCCCTCTCTTCCATCTAGAACAATACACCGATACGATGTTCAAACTCCAGTTTGaaacaaaaatgttacaataTTTACATGGCAAACAAAGCACACCAGAAAATGTTTATCAAACAATGATCAATCAAAGCAAAAGAGGAAGAAACGCATAGAAAACATGTCAAACATCAAACACAGCTCAAGTTTACTAGAAATGCAGACTATCCCGAACTGATGCAGCATTTTccttatatagtatagtatagagaACTGCCTTTATTGCTAGTTCTCCTTGCCCACCGTTCTCAAGTGCCTTTCAGACTGTGCCTCAATATCCGGCTGTGTCAGataagcagcacagtgacagacacaaAGGAAGCGATCTCAAGTAACATTTTTAAGAAATATTACAGTAAGTAACttttccaatgattatttgatgtatttgttgtggagttaattcaagcctttctgcgacgatgagtcacacacaatgttgttacaaagttcacgcacacgcATACAGTGCACGCATTTAACTTTACATTGTTTTTGCAcaaaaatgtgacaggatacatgttaaaaTTTAATGCTGTATGGATATTCTTTATgttaatgcacaaaataaacctgattaaagttcacaaactgggattgaagcgtcttcttttataattgtactgacatgcggctgtggtgatagagtaaagctgaagtaaatcacaG

Function

GO:

id name namespace
GO:0031984 organelle subcompartment cellular_component
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016061 False 698 lncRNA 0.43 3 34344082 34490887
TCONS_00016427 True 2117 lncRNA 0.36 2 34462686 34489461

Neighbor

gene id symbol gene type direction distance location
XLOC_008016 gria1a coding downstream 67508 34125855 ~ 34276574 (-)
XLOC_008015 itk coding downstream 269572 34045284 ~ 34074510 (-)
XLOC_008014 cyfip2 coding downstream 299630 33982007 ~ 34044452 (-)
XLOC_008013 foxa coding downstream 362538 33973146 ~ 33981544 (-)
XLOC_008012 zdhhc24 coding downstream 398283 33939213 ~ 33945799 (-)
XLOC_008018 si:ch211-232m8.3 coding upstream 19813 34510700 ~ 34513103 (-)
XLOC_008019 NA coding upstream 38997 34529884 ~ 34535102 (-)
XLOC_008020 NA coding upstream 61808 34552695 ~ 34556328 (-)
XLOC_008021 afap1l1a coding upstream 71539 34562426 ~ 34633960 (-)
XLOC_008022 ablim3 coding upstream 143258 34634145 ~ 34771864 (-)
XLOC_007641 CU855896.1 misc downstream 31936242 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 31936651 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 31937010 2406945 ~ 2407072 (-)
XLOC_008009 FP016208.2 non-coding downstream 445493 33875058 ~ 33898589 (-)
XLOC_008004 NA non-coding downstream 565830 33666082 ~ 33778252 (-)
XLOC_008005 NA non-coding downstream 599329 33722042 ~ 33744753 (-)
XLOC_007999 NA non-coding downstream 876391 33464948 ~ 33467691 (-)
XLOC_007983 CR812836.1 non-coding downstream 1294002 33048519 ~ 33050080 (-)
XLOC_008023 NA non-coding upstream 306741 34797628 ~ 34797996 (-)
XLOC_008025 NA non-coding upstream 597772 35088659 ~ 35112362 (-)
XLOC_008026 NA non-coding upstream 827111 35317998 ~ 35320874 (-)

Expression


Co-expression Network