XLOC_008013 (foxa)


Basic Information

Item Value
gene id XLOC_008013
gene name foxa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 33973146 ~ 33981544 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015667
TTCATTTACTAACTTTTCTGTCTGGACCGTCTGCTGTAAAGCAGTTAACGCACACTGTTGGATTTCTAGATGCTTCACTGAAACATTTCGCATTTAGTTGAATAACTGGCGAAATGATTGACGAAGTTAAACGAGAAAGAGGCGATCAATGGATGCCATATTACTCCAGCGAGATGTATTATGGCTCAGACAGCCTGCCATTGGGCCCCAGAGGATATTCTCCCCCAGAGCATCACTACCAGAGTTACGGGGTGCAGTGCGACTCAGCACCTGCAGTAAACCCTGGGAGACTCGGAAGCCCAGCAGGACTCCTGCCACCTGCAAACCCTCCAAAGGCATATGCTGAGATCAACTCCAGCGAACCAGAGTTTCAAGAGCTGAAATCAGTTTACCGGCGGACATTAAGCCATGCCAAACCGCCGTACTCCTACATCTCTCTCATCTGCATGGCCATCCAGCAGTCTCCAGCCAAGAGACTGACTCTGAACGAGATCTACGACTGGATCCGTCAGCTCTTCCCATATTACAGACAGAATCAGCAGAGATGGCAGAACTCCATCCGCCATTCCCTGTCCTTCAACGACTGCTTCGTGCGTGTCCCGAGATCTCCAGACTCTCCAGGAAAAGGCTCATACTGGGCTTTACACCCTGACTCCGGTAACATGTTTGAAAACGGATGCTACATGCGCCGCCAGAAGCGCTTCAAGTGTCAAAAATCCACATCAACAGGCAAAAACTCAGAAGGAGAAGATGTGAAAgtggaaaagaagaaaaagaaggagATCAAGTCAGTCAGCTCCTGTAAATCACCTACAAGTGATGCTACAAAACAGAGTTCAACAACAGTGAGCTACGCCAACACCAAACCAGCTTCTCCCTCCCATCTCAATCCCTCACATACTTTATTTCCCACTCAGCCTCCAGAGATCTCGACACATTTGCCTTCTCTGAGTGTGCCGTTTCCAGCATCAATGGAAACCAGCTTGCATTGTGAACCATCATCCCAGCATCAGCCCATTTCTGTCCCGCGGCTTGTGGACTTCCAGTACTGCGAGACTCCTGTTAGCTACCCGCTTTACTGCCAATCAAACAGCCATGCCAACTTCCCCTCATACACCACAGACTCTGTTTACTATCCTGGATTTAGCATGTGTTCGACTCCTCTTCTAAGTTCCTCCTGATCCAGGTCGGTTTAAggaaagacactgcaggtgaacagAGTTGAATAATGATCTAATAGTTGTCAGAATGCTTCCCCAGTTCATTGATTTTATTTAGAATCTGAAACTTTTTGGTATTAAAAGTTTTCTgaaattcttttaaaatatggaaatgaggcactatttaatttaatatgcgctgatttgcatacatttctgaaACAAGAACTTTGGATGGAAGTCAGTTTCAATATTATTGCTTCTTTTTTGATAAATTAGAGTCAAGGTTTGTTACAGAGTGGATTTTACAGTTCTCCATCATTCAGAAAATACTGCCAACAGAACATGTTTTATATACTCAAGTAAATTATGTATGAagataataatttgtttttaaaaaactttagaAAATGAATATCAATAATACTGAAAAGTTTGGCGAATGTACTGTAAGTGCTGCTGAAATGGAAATTTATGGCATTTACCATTTTAGAATATGATTATGATTGAAATCTACAAAAACAAATTGataaaatgtgataaaaagaaaacttaaatgtattttggattaattttaaaatttttagacCCTCCAAAAAATGACAGGTGcatgaaaaatgtgtttttgccTGCAGTTTCTTGCCTTAAAGGCTATTAAAATGGATCTGTTTCGGTTTCGATAGttttaattgtgtatatattagTCAATGGACCAGTAGGCGGAGGAGTTCTGTGGTTCTGTGAATGTTTTGGATGAATCCCTTGCTGTAAATCTGAAGTAAAAAAATTTGTAAAC
>TCONS_00015668
TGTCTTTAAAAATCACCTGATCACACCAGTATGGATGTCTGCAGCAGCTCTGGCTTCATGTCGACAGATGAGTTGAAGTCACACAGACTAGAGACTGACGTTAATGGATATAGATGTATTATGGCTCAGACAGCCTGCCATTGGGCCCCAGAGGATATTCTCCCCCAGAGCATCACTACCAGAGTTACGGGGTGCAGTGCGACTCAGCACCTGCAGTAAACCCTGGGAGACTCGGAAGCCCAGCAGGACTCCTGCCACCTGCAAACCCTCCAAAGGCATATGCTGAGATCAACTCCAGCGAACCAGAGTTTCAAGAGCTGAAATCAGTTTACCGGCGGACATTAAGCCATGCCAAACCGCCGTACTCCTACATCTCTCTCATCTGCATGGCCATCCAGCAGTCTCCAGCCAAGAGACTGACTCTGAACGAGATCTACGACTGGATCCGTCAGCTCTTCCCATATTACAGACAGAATCAGCAGAGATGGCAGAACTCCATCCGCCATTCCCTGTCCTTCAACGACTGCTTCGTGCGTGTCCCGAGATCTCCAGACTCTCCAGGAAAAGGCTCATACTGGGCTTTACACCCTGACTCCGGTAACATGTTTGAAAACGGATGCTACATGCGCCGCCAGAAGCGCTTCAAGTGTCAAAAATCCACATCAACAGGCAAAAACTCAGAAGGAGAAGATGTGAAAgtggaaaagaagaaaaagaaggagATCAAGTCAGTCAGCTCCTGTAAATCACCTACAAGTGATGCTACAAAACAGAGTTCAACAACAGTGAGCTACGCCAACACCAAACCAGCTTCTCCCTCCCATCTCAATCCCTCACATACTTTATTTCCCACTCAGCCTCCAGAGATCTCGACACATTTGCCTTCTCTGAGTGTGCCGTTTCCAGCATCAATGGAAACCAGCTTGCATTGTGAACCATCATCCCAGCATCAGCCCATTTCTGTCCCGCGGCTTGTGGACTTCCAGTACTGCGAGACTCCTGTTAGCTACCCGCTTTACTGCCAATCAAACAGCCATGCCAACTTCCCCTCATACACCACAGACTCTGTTTACTATCCTGGATTTAGCATGTGTTCGACTCCTCTTCTAAGTTCCTCCTGA

Function

symbol description
foxa Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; hypochord; margin; notochord; and prechordal plate.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-76 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; hypochord; margin; notochord; and prechordal plate.

Ensembl:

ensembl_id ENSDARG00000087094

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015667 False 1956 mRNA 0.41 2 33973146 33978117
TCONS_00015668 True 1121 mRNA 0.50 2 33973921 33981544

Neighbor

gene id symbol gene type direction distance location
XLOC_008012 zdhhc24 coding downstream 27347 33939213 ~ 33945799 (-)
XLOC_008011 slc24a6a coding downstream 36622 33898976 ~ 33936524 (-)
XLOC_008009 FP016208.2 coding downstream 74557 33875058 ~ 33898589 (-)
XLOC_008010 urp1 coding downstream 78231 33892300 ~ 33894915 (-)
XLOC_008008 si:ch73-335m24.2 coding downstream 100530 33859695 ~ 33872616 (-)
XLOC_008014 cyfip2 coding upstream 463 33982007 ~ 34044452 (-)
XLOC_008015 itk coding upstream 63740 34045284 ~ 34074510 (-)
XLOC_008016 gria1a coding upstream 144311 34125855 ~ 34276574 (-)
XLOC_008017 NA coding upstream 362538 34344082 ~ 34490887 (-)
XLOC_008018 si:ch211-232m8.3 coding upstream 529156 34510700 ~ 34513103 (-)
XLOC_007641 CU855896.1 misc downstream 31565306 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 31565715 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 31566074 2406945 ~ 2407072 (-)
XLOC_008004 NA non-coding downstream 194894 33666082 ~ 33778252 (-)
XLOC_008005 NA non-coding downstream 228393 33722042 ~ 33744753 (-)
XLOC_007999 NA non-coding downstream 505455 33464948 ~ 33467691 (-)
XLOC_007983 CR812836.1 non-coding downstream 923066 33048519 ~ 33050080 (-)
XLOC_008019 NA non-coding upstream 548340 34529884 ~ 34535102 (-)
XLOC_008020 NA non-coding upstream 571151 34552695 ~ 34556328 (-)
XLOC_008023 NA non-coding upstream 816084 34797628 ~ 34797996 (-)
XLOC_008025 NA non-coding upstream 1107115 35088659 ~ 35112362 (-)

Expression


Co-expression Network