XLOC_008008 (si:ch73-335m24.2)


Basic Information

Item Value
gene id XLOC_008008
gene name si:ch73-335m24.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 33859695 ~ 33872616 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015659
gagcgattctgagcgtgaaacctggcgtacgcaaagtttttgtgcgtacgcaacgttgatacatgaggccccagccctccaggaccaagattggtgacccctggtttaagatgttggcttgacgttggattttagtcactgtttaacacaatctaaaattattgtcattattggacgtcacaAAGTAACATTGTAGATgctggcgacctaaatctaacaccttatgacattgtgtgtacGCTAGGACTGTTCAGAAAGTGATTTTCATTACTTTTGCCTGGAAACCAGTGTTATTATCATTAAAGTGGCGGCTTATTAAACTGAGGTGTGAACTTTGTCAccttgaaaagaaaacaaatggaaaacaagtaaaaaaaactgtaactccAGTCTAATTAGTGCAGTGACACAAATATCTGCCAGTGTCAGTGCTGTAGAAAGAGTGCTTGTTCTCCAATCAACACAAAGCCACCATTGACACTTTCTCCCGGCCAGAAGTCAGAAGGCAGTAAACAGCCAAACAACTTCTCCTAGTGAAAAATCACAGCAGTTCGTAATGTACGCTGGGCACTATGCCTCCATGGAGCTCTTGTTGGTCCTGGTGTTTCCTCTTCGTCGTTCTTGCTGTCAACACTCGGCAAACCTCGTCAGCTCCAGATTTTactgATTACCTGCACAGGATCCTGAAGAACCACACTGCTCATGCCTGTGATGGAGAGACTCTGTCCATCAGATGTCCCTCTAGAACATCAGTGACTGTGCTCTCTGCGTTTTATGGCCGACGCGTCCCAAGTCCATATCTATGCCCATACACAAACCTAAACATGACAGAGGAGAACACTGACTGTGCATCAACCACAGCCATTCAGaaagTGATGTCTGAATGCCAGGATCGACAGGAGTGTCACATTTCTGTCGTGAGTCCAGTATTTGGTCAAGATCCCTGCCCTGAAGCCAGGAAATACATCATTGTCTCATACAAATGCAAGCCTGAACATCATCGCTCGAGAACGGTGTGTGAGAACGAGAGGCTGAGGCTGACCTGTAAGAACGACACAGTTCTGGCCATCTATTCAGCCACGTTCGGCCATCTGGAGCACGACAGCCTCGAGTGCCCTCAAGAGGCGAAAACAAAGACGGACATGGAGTGCTTGTCTCCGTCAGCATTGAGGAGGGTCTCGAGAAAGTGTCATGGCCGGACCAACTGCTCTGTCATGGCTGATGCTCAGGGTTTTGGAGACCCCTGTTTTCCTGGCACCAGAAAGCACCTGCGGGTGTCCTTTACATGTGTACCACGGTATCTCCTGGAAGATGTTGGACGTGGAAACATAGATCCCTTCTTGCTCTCTGACTATACACATGGAGGGTGGTATACTGGCCCCGGTGTGTCCAGACCACAAAACATTTTCACCAACTCTCTGGAAATCTTTTCCCAAATCCAGGGTCTTCCAGAGACAGTTGCTCTATACTTTGTCTCGGGTATATGTGCTGGACTGTTCTTCTTGCTGTGTTTGTTCGGCCTCAAATCCACCCTGATACGAGATCTGAAAGACCTGGCCTCTGAGCTGGGAGATGAGCTGAGGTCCTTTGACGACGATGCCTCCTTGCGTTCTACATTTCCCCCCCTCACACGCCCTTATCGCACACCGGACGTGTTCAATCCAGAGATGATAATGACAGTGGTGATGGAAGACAGGAGGGATGAGGACAAACCCGAGATGCCTAATGGAGACATCTGGCCCCATATCAACTCCAGTCCTTATGCCATGCACAAAATCAAAACCACCTCTGCTTGATCTCGATGTTCTACGTATGTTGTTGACCAAATACTAATTGTACTACTTAAGAAGATTGAAATCCAAGATTGGAGTGTCTAGGTCTTATCTGCTTATTTTTCCTCAATATACTATTCATGTAtgcattttcatatttatgtataatACAATCTGTGATTTATTAAATGAGTTTGGATGGAGCTCTGACATCAGATTTATTTGGATGGTGTGTATATTAAACATAATATAGGCCtacattatatatttgtttatcgAGCACATTTAAAGATAGATTGGGTCTAATTTTTATCTAAAACCTGTAAGTATTGTATGTGAACAAATATGGGGTGTACTAATGACAAATAATCCTAGTTTTGTGAGGCGAGTCCCAGTTTTTTGTGCTCAGGTTACAGCATGTTTGTTCAAATCAAGCTTAACATACTGCTGCTGGTTGCCAGAGCAATCGTGAACCTTCACCAAACAGAGGCTGAAGGTTGAGCCAACCTTATTACTTCATTACTTAACCCTCCTGTCGACttactggtaaaaaaaaatatccgtaaattgaaattaagagtaaaataaaactttaa
>TCONS_00015660
CTTCTCCTAGTGAAAAATCACAGCAGTTCGTAATGTACGCTGGGCACTATGCCTCCATGGAGCTCTTGTTGGTCCTGGTGTTTCCTCTTCGTCGTTCTTGCTGTCAACACTCGGCAAACCTCGTCAGCTCCAGATTTTactgATTACCTGCACAGGATCCTGAAGAACCACACTGCTCATGCCTGTGATGGAGAGACTCTGTCCATCAGATGTCCCTCTAGAACATCAGTGACTGTGCTCTCTGCGTTTTATGGCCGACGCGTCCCAAGTCCATATCTATGCCCATACACAAACCTAAACATGACAGAGGAGAACACTGACTGTGCATCAACCACAGCCATTCAGaaagTGATGTCTGAATGCCAGGATCGACAGGAGTGTCACATTTCTGTCGTGAGTCCAGTATTTGGTCAAGATCCCTGCCCTGAAGCCAGGAAATACATCATTGTCTCATACAAATGCAAGCCTGAACATCATCGCTCGAGAACGGTGTGTGAGAACGAGAGGCTGAGGCTGACCTGTAAGAACGACACAGTTCTGGCCATCTATTCAGCCACGTTCGGCCATCTGGAGCACGACAGCCTCGAGTGCCCTCAAGAGGCGAAAACAAAGACGGACATGGAGTGCTTGTCTCCGTCAGCATTGAGGAGGGTCTCGAGAAAGTGTCATGGCCGGACCAACTGCTCTGTCATGGCTGATGCTCAGGGTTTTGGAGACCCCTGTTTTCCTGGCACCAGAAAGCACCTGCGGGTGTCCTTTACATGTGTACCACGGTATCTCCTGGAAGATGTTGGACGTGGAAACATAGATCCCTTCTTGCTCTCTGACTATACACATGGTCTTCCAGAGACAGTTGCTCTATACTTTGTCTCGGGTATATGTGCTGGACTGTTCTTCTTGCTGTGTTTGTTCGGCCTCAAATCCACCCTGATACGAGATCTGAAAGACCTGGCCTCTGAGCTGGGAGATGAGCTGAGGTCCTTTGACGACGATGCCTCCTTGCGTTCTACATTTCCCCCCCTCACACGCCCTTATCGCACACCGGACGTGTTCAATCCAGAGATGATAATGACAGTGGTGATGGAAGACAGGAGGGATGAGGACAAACCCGAGATGCCTAATGGAGACATCTGGCCCCATATCAACTCCAGTCCTTATGCCATGCACAAAATCAAAACCACCTCTGCTTGATCTCGATGTTCTACGTATGTTGTTGACCAAATACTAATTGTACTACTTAAGAAGATTGAAATCCAAGATTGGAGTGTCTAGGTCTTATCTGCTTATTTTTCCTCAATATACTATTCATGTAtgcattttcatatttatgtataatACAATCTGTGATTTATTAAATGAGTTTGGATGG
>TCONS_00015661
CTTCTCCTAGTGAAAAATCACAGCAGTTCGTAATGTACGCTGGGCACTATGCCTCCATGGAGCTCTTGTTGGTCCTGGTGTTTCCTCTTCGTCGTTCTTGCTGTCAACACTCGGCAAACCTCGTCAGCTCCAGATTTTactgATTACCTGCACAGGATCCTGAAGAACCACACTGCTCATGCCTGTGATGGAGAGACTCTGTCCATCAGATGTCCCTCTAGAACATCAGTGACTGTGCTCTCTGCGTTTTATGGCCGACGCGTCCCAAGTCCATATCTATGCCCATACACAAACCTAAACATGACAGAGGAGAACACTGACTGTGCATCAACCACAGCCATTCAGGTAGACTGTATTTGATCAGCATTTA

Function

symbol description
si:ch73-335m24.2 Predicted to enable carbohydrate binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-203 Predicted to enable carbohydrate binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000074285

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015659 False 2368 mRNA 0.44 8 33859695 33872616
TCONS_00015660 False 1369 mRNA 0.48 7 33860089 33872092
TCONS_00015661 True 370 lncRNA 0.48 2 33868571 33872092

Neighbor

gene id symbol gene type direction distance location
XLOC_008007 ocrl coding downstream 546 33825482 ~ 33859149 (-)
XLOC_008006 vimr2 coding downstream 35366 33788835 ~ 33824329 (-)
XLOC_008004 NA coding downstream 81443 33666082 ~ 33778252 (-)
XLOC_008005 NA coding downstream 114942 33722042 ~ 33744753 (-)
XLOC_008003 xpnpep2 coding downstream 245901 33591626 ~ 33613794 (-)
XLOC_008009 FP016208.2 coding upstream 2442 33875058 ~ 33898589 (-)
XLOC_008010 urp1 coding upstream 19684 33892300 ~ 33894915 (-)
XLOC_008011 slc24a6a coding upstream 26360 33898976 ~ 33936524 (-)
XLOC_008012 zdhhc24 coding upstream 66597 33939213 ~ 33945799 (-)
XLOC_008013 foxa coding upstream 100530 33973146 ~ 33981544 (-)
XLOC_007641 CU855896.1 misc downstream 31451855 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 31452264 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 31452623 2406945 ~ 2407072 (-)
XLOC_007999 NA non-coding downstream 392004 33464948 ~ 33467691 (-)
XLOC_007983 CR812836.1 non-coding downstream 809615 33048519 ~ 33050080 (-)
XLOC_007979 BX247946.1 non-coding downstream 940861 32913680 ~ 32918834 (-)
XLOC_008017 NA non-coding upstream 471466 34344082 ~ 34490887 (-)
XLOC_008019 NA non-coding upstream 657268 34529884 ~ 34535102 (-)
XLOC_008020 NA non-coding upstream 680079 34552695 ~ 34556328 (-)
XLOC_008023 NA non-coding upstream 925012 34797628 ~ 34797996 (-)

Expression


Co-expression Network