RNA id: TCONS_00015594


Basic Information

Item Value
RNA id TCONS_00015594
length 1335
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_007977
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 32881625 ~ 32884138 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGCGAGACGAACCTTTTAAAAACGTCGTCTCAACTTTTCAATCGGCCATTTCGAATCAGCCGGCATTCCACGCTAGTCCTGCGGCAGAGCGGGATTGACCTCTTCAAGCGACACCTCTCCAAGAACATCCAACAATGAGTGAGACCGCCATCTCCTTCGCCAAGGACTTCTTGGCCGGTGGTATTGCCGCTGCCATCTCTAAAACCGCCGTGGCCCCCATTGAGAGAGTCAAACTGCTGCTTCAGGTGCAACATGCTAGCAAACAGATTACAGCAGATAAGCAGTACAAGGGCATTATGGACTGCGTGGTGCGTATCCCCAAGGAGCAGGGCTTCCTGTCGTTCTGGAGAGGAAACTTGGCCAACGTCATCAGATACTTCCCCACACAGGCCCTCAACTTTGCTTTCAAGGACAAGTACAAGAAGGTCTTCCTTGATGGTGTGGACAAGCGCACCCAGTTTTGGAGGTACTTCGCTGGTAACCTGGCTTCAGGTGGTGCTGCTGGTGCCACATCCCTCTGCTTCGTGTATCCCCTTGACTTCGCAAGAACCCGTCTTGCTGCCGATGTCGGAAAGGCTGGAGCAGAAAGAGAGTTCAGTGGGCTGGGTAACTGCTTGGTAAAGATCTCCAAATCTGATGGCATCAAGGGTCTGTACCAGGGCTTCAACGTGTCCGTGCAGGGTATCATCATTTACAGAGCTGCCTACTTCGGCATTTATGACACAGCCAAGGGTATGCTGCCCGATCCCAAGAACACCCATATTGTTGTGAGCTGGATGATTGCTCAGAGTGTGACTGCTGTTGCTGGTCTTGCTTCCTACCCCTTCGACACAGTGCGTCGTCGTATGATGATGCAGTCTGGACGTAAAGGAGCCGACATCATGTACAGTGGCACAATTGACTGCTGGAGGAAGATCGCACGTGATGAGGGTGGCAAGGCTTTCTTCAAGGGAGCCTGGTCCAACGTTCTCAGAGGCATGGGTGGCGCCTTTGTGCTGGTCTTGTATGATGAGCTGAAGAAGGTCATTTAAATGTTTTCCTGTCCACCATTCAATGTGAGATGTTTAACTGTAACATATCTTGTACATTTGGAAGGACTCTCAAATTCCGCCTTATTTATAGGGACCAACTAGTATGTCAGTACTAGTTGTACTGGGGGAAATTTGTTTTGCGGTTTTTCTTTTGCCCCGTTCATCTCTCCTTTTTGTTCCCCTCACCGTACTGTCATTCccagaaagaaagaacaaaagaatgcCAGGTACTAAAATCTACCTGTTTTCCAGCCGGTCTGTTTTTAGTCTTCATCAATAAAGACCCACTGAATGAACCTACA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020419-9 Predicted to enable ATP:ADP antiporter activity. Predicted to act upstream of or within mitochondrial ADP transmembrane transport and mitochondrial ATP transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including bone element; eye; female organism; integument; and male organism. Orthologous to several human genes including SLC25A5 (solute carrier family 25 member 5).

Ensembl:

ensembl_id ENSDART00000105726

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015586 lncRNA downstream 92037 32782904 ~ 32789588 (-) True XLOC_007973
TCONS_00015585 lncRNA downstream 92056 32773672 ~ 32789569 (-) False XLOC_007973
TCONS_00016059 lncRNA downstream 97609 32782565 ~ 32784016 (-) False XLOC_007973
TCONS_00015582 lncRNA downstream 126555 32719430 ~ 32755070 (-) False XLOC_007971
TCONS_00015597 lncRNA upstream 29542 32913680 ~ 32918834 (-) True XLOC_007979
TCONS_00015601 lncRNA upstream 164381 33048519 ~ 33050080 (-) True XLOC_007983
TCONS_00016060 lncRNA upstream 331228 33215366 ~ 33218418 (-) True XLOC_007985
TCONS_00016422 lncRNA upstream 414327 33298465 ~ 33307753 (-) False XLOC_007989
TCONS_00016423 lncRNA upstream 417882 33302020 ~ 33305342 (-) False XLOC_007989
TCONS_00015593 mRNA downstream 5345 32866748 ~ 32876280 (-) True XLOC_007976
TCONS_00015589 mRNA downstream 15198 32859430 ~ 32866427 (-) False XLOC_007975
TCONS_00015590 mRNA downstream 15274 32859444 ~ 32866351 (-) False XLOC_007975
TCONS_00015592 mRNA downstream 15484 32860255 ~ 32866141 (-) True XLOC_007975
TCONS_00015591 mRNA downstream 15901 32860058 ~ 32865724 (-) False XLOC_007975
TCONS_00015596 mRNA upstream 593 32884731 ~ 32893785 (-) True XLOC_007978
TCONS_00015598 mRNA upstream 67704 32951842 ~ 32959851 (-) True XLOC_007980
TCONS_00015599 mRNA upstream 77580 32961718 ~ 32965169 (-) True XLOC_007981
TCONS_00015600 mRNA upstream 99631 32983769 ~ 33044955 (-) True XLOC_007982
TCONS_00015602 mRNA upstream 186146 33070284 ~ 33095917 (-) False XLOC_007984
TCONS_00015549 other downstream 1018908 31855592 ~ 31862717 (-) False XLOC_007959
TCONS_00015558 other downstream 1020798 31860750 ~ 31860827 (-) True XLOC_007962
TCONS_00015557 other downstream 1021155 31860408 ~ 31860470 (-) True XLOC_007961
TCONS_00015555 other downstream 1022119 31859430 ~ 31859506 (-) True XLOC_007960
TCONS_00015548 other downstream 1024289 31855592 ~ 31857336 (-) False XLOC_007959
TCONS_00015612 other upstream 336718 33220856 ~ 33231764 (-) True XLOC_007986
TCONS_00015626 other upstream 449310 33333448 ~ 33333581 (-) True XLOC_007990
TCONS_00015628 other upstream 456000 33340138 ~ 33344973 (-) True XLOC_007991
TCONS_00015641 other upstream 589666 33473804 ~ 33477987 (-) False XLOC_008000
TCONS_00015649 other upstream 591682 33475820 ~ 33477732 (-) False XLOC_008000

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_11600258_11602519.mRNA True 1447 mRNA 0.49 4 CI01000000 11599982 ~ 11602580 (-)
bowfin (Amia calva) AMCG00021316 True 3734 mRNA 0.48 10 CM030130.1 14147920 ~ 14167490 (-)