G95494


Basic Information

Item Value
gene id G95494
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3633635 ~ 3633998 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU108620
ATGACCAGGAAACTATAAAGCACACCCGAACCAAACAGAGTTAGCTTCTGTGTCTTCAGTAAGCGCTTTCTGTGAAACTGTCTGTCTTATTTATTGTTGTTTGTCTCTCACGTTATTCAAGCACACATATCTAAGACACTATTATGGCGACACAAGTGCAGCAATTCAGGCCGTGTGCGTCTCCTTGTCCTCGCTACATTCCGGCGGGAGATGCACACGAGCTTTGTGTTGTTTGCTTGGGAGTGGAGCATGCCCAGTCAGCTCTCGAGGGAGCTGGCTGTGAGCATTGCGAGCTGATGTCTATGAAGACGCTCCGCTCCCGCCGGGCGCTTTTCGAGGAAAGCGGTTCGGCTCGCGCTCCCCG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106612170, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU108620 True 364 lncRNA 0.52 1 3633635 3633998

Neighbor

gene id symbol gene type direction distance location
CI01000016_03628266_03631245 NA coding upstream 1708 3628266 ~ 3631927 (+)
CI01000016_03592692_03617887 ATP8B2 coding upstream 15676 3592620 ~ 3617959 (+)
CI01000016_03572467_03575117 AQP10A coding upstream 58448 3572467 ~ 3575187 (+)
CI01000016_03565923_03571228 NA coding upstream 61998 3565000 ~ 3571637 (+)
CI01000016_03559585_03560912 NA coding upstream 72545 3559326 ~ 3561090 (+)
CI01000016_03638070_03640560 NA coding downstream 2792 3636790 ~ 3641199 (+)
CI01000016_03726678_03729904 NA coding downstream 92445 3726443 ~ 3731010 (+)
CI01000016_03767260_03771612 NA coding downstream 133262 3766998 ~ 3771828 (+)
CI01000016_03780734_03792228 NA coding downstream 146449 3780447 ~ 3792416 (+)
CI01000016_03798165_03803686 NA coding downstream 164039 3798037 ~ 3804627 (+)
G95524 NA non-coding upstream 102698 3530583 ~ 3530937 (+)
G95522 NA non-coding upstream 105080 3528024 ~ 3528555 (+)
G95521 NA non-coding upstream 109547 3523721 ~ 3524088 (+)
G95520 NA non-coding upstream 110275 3523150 ~ 3523360 (+)
G95518 NA non-coding upstream 121993 3511408 ~ 3511642 (+)
G95533 NA non-coding downstream 35707 3669705 ~ 3727497 (+)
CI01000016_03965750_03967383 NA non-coding downstream 300239 3965498 ~ 3967397 (+)
G95500 NA non-coding downstream 352774 3986772 ~ 3989111 (+)
G93406 NA other upstream 2706103 905400 ~ 927532 (+)
G95439 NA other downstream 228177 3862175 ~ 3862305 (+)
G95648 NA other downstream 638638 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 1200560 4829592 ~ 4837457 (+)
G95792 NA other downstream 1585882 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 1771871 5405791 ~ 5407963 (+)

Expression


Co-expression Network