G99189


Basic Information

Item Value
gene id G99189
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9825890 ~ 9835996 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU112858
TATGATTTAATTTTTAGCAGCCATTCCTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATTATTCTAATTTGCTGAATTACTGCTCAAGAAATATATACAAAGAAGGAATTTTGATGAATATTTCAACTGTTTTTGTCCATACAATGAAAGACAATGGGGTCCAAAATGGCATTTTTTCAAAATATCTTCTTTTGTTTTCACAGATGAAAGAAATACAGATGAAACTGACCTGGAACCCCAGCCTTCATCCACATGTTAATGTCCGTTCCCTCTCCGTGTTCTTCAAGTGATGTGACATTGATGGCAGCCAACAGTTTCATCACCTCCTTCATGATTGCCCGAGCTTTGTCACTGCCAGTGAACTGCAGTCCCAGAGGGCGGAAGGTGCCCAGGTCAGACTCCATAACCATGTCAAAGTTTGAGATGTTGGCTTTGTGCTGTTGGAAGTACTGAGCAGCTCCCACCCCGCCAGGCTCCTCTGCAGACCACAGCACCGTCCTCAGTGTTCTTTTGGGACGCAACCCTAAGTCTCTGATCAAAGAAAGTGCCTCCCAGGAAATGGCGACTCCGCCTCCATCATCCATAGCGCCCTGGCCCACATCCCAGCTGTCCAGGTGACCACTGAGCAGCACCACCTGAAAGAGAGCCAGAGCAAAAAGCATACGAATGAACAGTAAAATAAATATTTAATAACATATTTTCTCAGCATCGTTTTCATATATAGTTACACAATTGTTTATTCATGTATAAAAAGGGTTTACATAACAGACTATAAAGGGAAAAAAGGCTTCCTGGCAAACTTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU112858 True 807 lncRNA 0.43 4 9825890 9835996

Neighbor

gene id symbol gene type direction distance location
CI01000016_09739013_09746676 NA coding downstream 79214 9739013 ~ 9746676 (-)
CI01000016_09654611_09661197 NA coding downstream 164693 9653502 ~ 9661197 (-)
CI01000016_09638800_09651752 CEP76 coding downstream 174138 9638592 ~ 9651752 (-)
CI01000016_09510177_09512196 ID4 coding downstream 313525 9509622 ~ 9512428 (-)
CI01000016_09475913_09487996 NA coding downstream 337598 9474997 ~ 9488292 (-)
CI01000016_09959197_09962175 NA coding upstream 121926 9957922 ~ 9963244 (-)
CI01000016_10025722_10027148 NA coding upstream 189506 10025502 ~ 10027259 (-)
CI01000016_10089136_10135299 NA coding upstream 252720 10088716 ~ 10135299 (-)
CI01000016_10228314_10299064 ULK4 coding upstream 392318 10228314 ~ 10299064 (-)
CI01000016_10386099_10386648 NA coding upstream 549829 10385825 ~ 10387482 (-)
G99180 NA non-coding downstream 19976 9805316 ~ 9805914 (-)
G99173 NA non-coding downstream 26218 9798952 ~ 9799672 (-)
G99087 NA non-coding downstream 32661 9789311 ~ 9793229 (-)
G99156 NA non-coding downstream 76817 9748390 ~ 9749073 (-)
G99119 NA non-coding downstream 221419 9603846 ~ 9604471 (-)
G99201 NA non-coding upstream 16210 9852206 ~ 9852437 (-)
G99204 NA non-coding upstream 19626 9855622 ~ 9855829 (-)
G99216 NA non-coding upstream 51377 9887373 ~ 9887587 (-)
G99217 NA non-coding upstream 51661 9887657 ~ 9888150 (-)
G99225 NA non-coding upstream 81900 9917896 ~ 9918176 (-)
G99178 NA other downstream 10935 9814361 ~ 9814955 (-)
G98691 NA other downstream 568279 9256102 ~ 9257611 (-)
G98679 NA other downstream 585961 9234996 ~ 9239929 (-)
CI01000016_08926089_08945071 NA other downstream 880661 8925960 ~ 8945229 (-)
G100190 NA other upstream 215172 10051168 ~ 10052389 (-)

Expression


Co-expression Network