XLOC_008031


Basic Information

Item Value
gene id XLOC_008031
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 35492150 ~ 35496528 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016433
GttcattttatgaaaaaaaaaaaaattattacaaacaatgtttatttgaaatgtgtCAATGCTATCACAGTTTATAGAAAAAAGTGCACAAGCATAATACATTTCCATAATTTTCTTTTCATAAATTTCGAGCACAGACACAATCATATTAATGAGAACAAATATCTTCTTTATGAaacaaacaagcaataaaaaaagtCCACATCCCATAAACAATTCATTTTAATTCTTATATCACACACAACCTTGAATATCAAATTAAAAACATACCTGTTCAGATCAGTCATAAATAGAAAACAAAGCAACAGCAACCTTGACATATTTAATGCCAATAATGAACAAGAAAACTGCAGTTATACATCAGACCAAATGAAAGAACCTTTTTGTGAAGCTGATAAGGCATGGCACATTATACACCCGGTGAGGGGAAACAAATCAGCGCTCTGAAGGCTGTGTGTCCTCATCTAGAACCaataaatcatcatttaaaaagacattcttgtggaaaaacaatgcaaaactgGTGGAGCCCCAAACTAAAAACATCCCGCAACAGAACTTTGGTCTCACAACATTTGACTTGTGTGCAAGAGCGTCCATTTGTGTTAGCATGACTGTTTGTGTTCCTTTTCCTCACCTTTTCACTTTTCTCCATCATTTTAAGAGGCTGTTGAAGCGTTTCAGAGTCCGGCTTCATCATTGTTTGTGTGTTGAGTCTGTCGGCTGCTGGGCTCAGGGGAAGCATCCACGTGTGCTCTCTGATAAGTCAAACCTCTTCTTCCCTGACTCCGCCGTCTCTGTCCTGGAGAAAGTCTCTGACAGACGCTCATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016433 True 831 lncRNA 0.37 2 35492150 35496528

Neighbor

gene id symbol gene type direction distance location
XLOC_008030 srpx2 coding downstream 30002 35442511 ~ 35462148 (-)
XLOC_008029 rnaseh2c coding downstream 77591 35409323 ~ 35414559 (-)
XLOC_008028 lsm11 coding downstream 86427 35392736 ~ 35405723 (-)
XLOC_008027 NA coding downstream 144155 35344199 ~ 35347995 (-)
XLOC_008026 NA coding downstream 171276 35317998 ~ 35320874 (-)
XLOC_008032 mrpl18 coding upstream 3150 35499678 ~ 35505537 (-)
XLOC_008033 pdgfc coding upstream 70793 35567321 ~ 35853647 (-)
XLOC_008034 gask1b coding upstream 380348 35876876 ~ 35883019 (-)
XLOC_008035 tmem144b coding upstream 388325 35884853 ~ 35892767 (-)
XLOC_008036 BX511223.1 coding upstream 435882 35932410 ~ 36273934 (-)
XLOC_007641 CU855896.1 misc downstream 33084310 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 33084719 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 33085078 2406945 ~ 2407072 (-)
XLOC_008025 NA non-coding downstream 379788 35088659 ~ 35112362 (-)
XLOC_008023 NA non-coding downstream 694154 34797628 ~ 34797996 (-)
XLOC_008020 NA non-coding downstream 935822 34552695 ~ 34556328 (-)
XLOC_008043 NA non-coding upstream 1092443 36588971 ~ 36591733 (-)
XLOC_008046 NA non-coding upstream 1412939 36909467 ~ 36913357 (-)
XLOC_008047 BX323578.1 non-coding upstream 1531396 37027924 ~ 37128570 (-)
XLOC_008048 FP102806.1 non-coding upstream 1670000 37166528 ~ 37418368 (-)

Expression


Co-expression Network