XLOC_008047 (BX323578.1)


Basic Information

Item Value
gene id XLOC_008047
gene name BX323578.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 37027924 ~ 37128570 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015724
AACACGGTCACAGCCAGAATCGCATTTATCAAAGTAATTGAAGGCATGACACACAGTACGCAGCAATGTTACAGCATGGTTGCACTAGCATTTTTTAAAAGGACTACAGGCAGGACAGGAAAAAAATGGCCTCTTCTTGGagaagcaggaaaaaaaaaacatacagttgtTGGGTGCTGTGGTGAAACCTAATGATTAGGCTGCTGATCTGgtgtaagcagaaaaaaaaacttgctgattCTGACCTCTGTTTTGGTCCCAGGGCTTGAAATTTATGCCCACACAGACATCCCGATGGGAGAGAGAGTCTGCCGTGCTTGTGAGCTCAGAGGGCCAAGCTAACTCAACCAAAAGATCTTAGAGAGAGGATAACATCCCCGGAGAACAGCTGCCCTGAAGCAGGTGCAACAACCGAAGTAGGATTTGATTGCCAGTGGCAGCTGGAAGTACGGTCAAAGCTAATTTCGTCCCACCGGACCCATGCCTGGCGACTGGAGTGGCCCTGAGTTTTTCACAACATGATTTAATACACTCCCCCAAGACCAGAAGGCAGGAATTAGGACCGTATGTGGCATCTCTTCCTATCCCAGACTTCCTCTCAAAAATCTGCGAACATACTCCAGCCATGATGTTCACACATATAGATAGCTGGTGCCAAACAATTGGAGAAATGCAATGTCTGCTTGACACCCACACATATTttcaagcacacatacacacacacacacacacacacacatgcacacaattaaatattaaatggccCTCAAAACCCATTTCCCAGCTCTTGTTTTTGCATGCATTTGTTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117556

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015724 True 809 lncRNA 0.45 3 37027924 37128570

Neighbor

gene id symbol gene type direction distance location
XLOC_008046 NA coding downstream 114567 36909467 ~ 36913357 (-)
XLOC_008045 rnf130 coding downstream 164492 36765612 ~ 36863432 (-)
XLOC_008044 ctso coding downstream 264622 36752033 ~ 36763302 (-)
XLOC_008043 NA coding downstream 436191 36588971 ~ 36591733 (-)
XLOC_008042 aga coding downstream 590675 36428441 ~ 36437249 (-)
XLOC_008048 FP102806.1 coding upstream 37958 37166528 ~ 37418368 (-)
XLOC_008049 NA coding upstream 258928 37387498 ~ 37389414 (-)
XLOC_008050 NA coding upstream 978930 38107500 ~ 38108201 (-)
XLOC_008051 csnk1a1 coding upstream 1634407 38762977 ~ 38783619 (-)
XLOC_008052 sil1 coding upstream 1666948 38795518 ~ 38809561 (-)
XLOC_007641 CU855896.1 misc downstream 34620084 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 34620493 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 34620852 2406945 ~ 2407072 (-)
XLOC_008036 BX511223.1 non-coding downstream 753990 35932410 ~ 36273934 (-)
XLOC_008031 NA non-coding downstream 1531396 35492150 ~ 35496528 (-)
XLOC_008027 NA non-coding downstream 1679929 35344199 ~ 35347995 (-)
XLOC_008054 NA non-coding upstream 1700233 38828803 ~ 38830442 (-)
XLOC_008055 BX088707.1 non-coding upstream 1716934 38845504 ~ 38847375 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_09913788_09975299 NA coding CI01000000 null 9913659 ~ 9976167 (-)