XLOC_008048 (FP102806.1)


Basic Information

Item Value
gene id XLOC_008048
gene name FP102806.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 37166528 ~ 37418368 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015725
GCAGACAAAATATTCACCATGGACAACAGCATCACTCAAAAATTTAAATAGCTAAGGTTACTTACCTTCATGCCACTGCAACACACATCTAGAAGATCTCTCTAAGGTAGTATTTCAAATAGTTGAGATATTACTAGAGATAGTCCAATTCTGTGAAGCCATATGATACTCTTGCGCACTGAATGTGTCAGCCGAGCCGTTCTCTTTCCTGACACTTTTCTCCTCATTAGCAGTCAAGttacctttaaaaataaaaaaaaaaatggcgcCGTCTGGACGCGACGCTGACGTCGAGTGTAGCAAATCAGGTGATTAAACGCGGCATGGCGTTTTGTTCAAAACATATCATCGACGAAAATGTTTGACTGAAATAACAGATAGGAGCATAGGTTCCTAAAACGCAAGCAGTTATGCCACAAGACGGCTTATATTTTAGCTGTATATaaagttgtgtttgttttttttttttttttttttttttgagtaattcACTGAATTGAACGGATAAGGAACACCACGATGACGAAACATAAGGCACATTAGGATGGATGTGTTTGCGCTAATGGCCCGCTCTACACTTCGCCCCCACAATGTGGAGAAATGCATAAAAGCTACACCAATTCAACTTACATATTGATGCCAACTGTGGGCCACATGCTTTCCTTTTCATCCACCCCCTTCCATCAACTCTCTCTTCAATGATGAGTGTCATCCAGTTACACTGGCAattaggaaagaaaaaaaaaagGTCACAAGTGTGATCAAAAGCTCCTGCAATGGTATTAAAAGACTCTGGGGAGCCATCGGAGGAGAGACCGCACTTCCATTTGACATTCCTCACAAGGGGATTACATCTGAGTGTCACCGCCAGAGGAGAGGAAAACATAAGATGATGGTATGGACCTCTATTAGAATATACTACTGCACTAAACCCACTCACCAGTTCCAGTTCCTATGGCTAACTTCCAG
>TCONS_00015726
GCAGACAAAATATTCACCATGGACAACAGCATCACTCAAAAATTTAAATAGCTAAGGTTACTTACCTTCATGCCACTGCAACACACATCTAGAAGATCTCTCTAAGGTAGTATTTCAAATAGTTGAGATATTACTAGAGATAGTCCAATTCTGTGAAGCCATATGATACTCTTGCGCACTGAATGTGTCAGCCGAGCCGTTCTCTTTCCTGACACTTTTCTCCTCATTAGCAGTCAAGttacctttaaaaataaaaaaaaaaatggcgcCGTCTGGACGCGACGCTGACGTCGAGTGTAGCAAATCAGGTGATTAAACGCGGCATGGCGTTTTGTTCAAAACATATCATCGACGAAAATGTTTGACTGAAATAACAGATAGGAGCATAGGTTCCTAAAACGCAAGCAGTTATGCCACAAGACGGCTTATATTTTAGCTGTATATaaagttgtgtttgttttttttttttttttttttttttgagtaattcACTGAATTGAACGGATAAGGAACACCACGATGACGAAACATAAGGCACATTAGGATGGATGTGTTTGCGCTAATGGCCCGCTCTACACTTCGCCCCCACAATGTGGAGAAATGCATAAAAGCTACACCAATTCAACTTACATATTGATGCCAACTGTGGGCCACATGCTTTCCTTTTCATCCACCCCCTTCCATCAACTCTCTCTTCAATGATGAGTGTCATCCAGTTACACTGGCAattaggaaagaaaaaaaaaagGTCACAAGTGTGATCAAAAGCTCCTGCAATGGTATTAAAAGACTCTGGGGAGCCATCGGAGGAGAGACCGCACTTCCATTTGACATTCCTCACAAGGGGATTACATCTGAGTGTCACCGCCAGAGGAGAGGAAAACATAAGATGATGGTAAGTCTAAATGCTTTAAGCTGAGGGAAGGGAACAATTGCCAGACAGAGACCAAATAAAAAGCTCATTTTCTCCTCACTGTGGTGTGTACACATAACGTCAGCACGGACAAGGAAATAATGGGGCCGATGCTCTGAATTGCATTTGAAGCATCTCCAATATCGCTTTGGGGTATCGCAATCATAGAgaggagaagaagaaaaagattCTTTGACAGGCTGTAAAAGTAAGAGAAGCAACAAGAAAAGAGAAAACGAACAAGCAGACTTGAGCTGGCATGAAAATAAGGCAAAATAAATCGCGCTGATATAGCATATGACACCTTCAGCAGACACCTGCCAtgcatgtttaaataatttaccaaatGTCATCACGCAGGCTTTAAAACACAGAGTGCTCCTGTAATAGGAACTCCCCCCTCTGGTGACAGGTGCCTCTGTGAACAAGACACGCGCATCTTTCTGTGTATATCCAAGCAGGCatctttaatgaataatatattgCCACATCACAGGCTGTAAGAGTGACTGAAGAGTTTCAAGTATTATCCGCATTTCTATAATGCTTGATTCGCAATGGTCAATCATGACATCCAGTGGTCAGACCTTTCATTGGGAAGACTGTCAAATAAAAGTACTCATgaagagattttaaatattcatttagtttttgaaGCAGCTTCATGTGAAAGGTAATGTTCGTAAGATCTTTTTCTGCAGATTAGAGCTGGACAAC
>TCONS_00015727
GCAGACAAAATATTCACCATGGACAACAGCATCACTCAAAAATTTAAATAGCTAAGGTTACTTACCTTCATGCCACTGCAACACACATCTAGAAGATCTCTCTAAGGTAGTATTTCAAATAGTTGAGATATTACTAGAGATAGTCCAATTCTGTGAAGCCATATGATACTCTTGCGCACTGAATGTGTCAGCCGAGCCGTTCTCTTTCCTGACACTTTTCTCCTCATTAGCAGTCAAGttacctttaaaaataaaaaaaaaaatggcgcCGTCTGGACGCGACGCTGACGTCGAGTGTAGCAAATCAGGTGATTAAACGCGGCATGGCGTTTTGTTCAAAACATATCATCGACGAAAATGTTTGACTGAAATAACAGATAGGAGCATAGGTTCCTAAAACGCAAGCAGTTATGCCACAAGACGGCTTATATTTTAGCTGTATATaaagttgtgtttgttttttttttttttttttttttttgagtaattcACTGAATTGAACGGATAAGGAACACCACGATGACGAAACATAAGATGCATTCATGGCAGGAGGTCAGGACTGAAGAACACTGGGTCAGGGAAGCAAGGCGGGGCTTGGTGAAGAGTAAAGCTCCATCCTTTAGCCCACACTCGCCTTCTTTTCCCATAATGAGGCCCACAGGCTGggaaaatgtaaatacagcaatTACAACATTGGAAGTTCTGGCCCAAGGGGTTGCCCTTTACACGGAACGCTGAGTGCTGGGCACATTAGGATGGATGTGTTTGCGCTAATGGCCCGCTCTACACTTCGCCCCCACAATGTGGAGAAATGCATAAAAGCTACACCAATTCAACTTACATATTGATGCCAACTGTGGGCCACATGCTTTCCTTTTCATCCACCCCCTTCCATCAACTCTCTCTTCAATGATGAGTGTCATCCAGTTACACTGGCAattaggaaagaaaaaaaaaaggtacgtGCGCATTTGTTCTGAGAGAAATTTGATTAAACAGTGGTGGGATTAATGTACTGTTATTATATCACATTGTTGTGCTGCACAATGCATGTATATCGGGGTATATAAACATCACTGCCGAGGGGAGTTTGTGCTGGTGTTTTAAAGTTTTACATAAGCTGTGATTTTAAAGGGGAAATCTAATTAAAGGTGTAAATGATGAAGCAATGTAAACCGCATGCTCTTTTAGTTGCTTAGCACGCTTCACCAATACTAAAAccccttattaaaaaaaaaaaaaaaaggatgagcAAGTTGGTCCTTGATTTGCACATTTAACTGGATGATGCTTTTGGTTTAATTGTGAAACTGCGAGAGTGGCACCAGTGTGGTGATTTATAAAGCTTTCCAAAGTGTCTAATGGGACAACTGAACAGAGCATTTGCATATTGGATGAGGCACAGAATGGAAGAGGGAAAGAAAGAAGCATAATAAAAAGGCGTCAACTGAAAAAAGTGATATCTACAGTATATTATAGGCAGGGTACTACTGTT

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0019184 nonribosomal peptide biosynthetic process biological_process
GO:0017109 glutamate-cysteine ligase complex cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117254

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015725 False 969 lncRNA 0.41 4 37166528 37418368
TCONS_00015726 False 1630 lncRNA 0.41 3 37172438 37418368
TCONS_00015727 True 1495 lncRNA 0.40 3 37357318 37418368

Neighbor

gene id symbol gene type direction distance location
XLOC_008047 BX323578.1 coding downstream 37958 37027924 ~ 37128570 (-)
XLOC_008046 NA coding downstream 253171 36909467 ~ 36913357 (-)
XLOC_008045 rnf130 coding downstream 303096 36765612 ~ 36863432 (-)
XLOC_008044 ctso coding downstream 403226 36752033 ~ 36763302 (-)
XLOC_008043 NA coding downstream 574795 36588971 ~ 36591733 (-)
XLOC_008050 NA coding upstream 689132 38107500 ~ 38108201 (-)
XLOC_008051 csnk1a1 coding upstream 1344609 38762977 ~ 38783619 (-)
XLOC_008052 sil1 coding upstream 1377150 38795518 ~ 38809561 (-)
XLOC_008053 spdl1 coding upstream 1392017 38810385 ~ 38843690 (-)
XLOC_008054 NA coding upstream 1410435 38828803 ~ 38830442 (-)
XLOC_007641 CU855896.1 misc downstream 34758688 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 34759097 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 34759456 2406945 ~ 2407072 (-)
XLOC_008036 BX511223.1 non-coding downstream 892594 35932410 ~ 36273934 (-)
XLOC_008031 NA non-coding downstream 1670000 35492150 ~ 35496528 (-)
XLOC_008055 BX088707.1 non-coding upstream 1427136 38845504 ~ 38847375 (-)
XLOC_008063 NA non-coding upstream 2463217 39881585 ~ 39883088 (-)
XLOC_008065 FP236502.1 non-coding upstream 3029000 40447368 ~ 40447484 (-)

Expression


Co-expression Network