RNA id: TCONS_00015727


Basic Information

Item Value
RNA id TCONS_00015727
length 1495
lncRNA type lincRNA
GC content 0.40
exon number 3
gene id XLOC_008048
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 37166528 ~ 37418368 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGACAAAATATTCACCATGGACAACAGCATCACTCAAAAATTTAAATAGCTAAGGTTACTTACCTTCATGCCACTGCAACACACATCTAGAAGATCTCTCTAAGGTAGTATTTCAAATAGTTGAGATATTACTAGAGATAGTCCAATTCTGTGAAGCCATATGATACTCTTGCGCACTGAATGTGTCAGCCGAGCCGTTCTCTTTCCTGACACTTTTCTCCTCATTAGCAGTCAAGttacctttaaaaataaaaaaaaaaatggcgcCGTCTGGACGCGACGCTGACGTCGAGTGTAGCAAATCAGGTGATTAAACGCGGCATGGCGTTTTGTTCAAAACATATCATCGACGAAAATGTTTGACTGAAATAACAGATAGGAGCATAGGTTCCTAAAACGCAAGCAGTTATGCCACAAGACGGCTTATATTTTAGCTGTATATaaagttgtgtttgttttttttttttttttttttttttgagtaattcACTGAATTGAACGGATAAGGAACACCACGATGACGAAACATAAGATGCATTCATGGCAGGAGGTCAGGACTGAAGAACACTGGGTCAGGGAAGCAAGGCGGGGCTTGGTGAAGAGTAAAGCTCCATCCTTTAGCCCACACTCGCCTTCTTTTCCCATAATGAGGCCCACAGGCTGggaaaatgtaaatacagcaatTACAACATTGGAAGTTCTGGCCCAAGGGGTTGCCCTTTACACGGAACGCTGAGTGCTGGGCACATTAGGATGGATGTGTTTGCGCTAATGGCCCGCTCTACACTTCGCCCCCACAATGTGGAGAAATGCATAAAAGCTACACCAATTCAACTTACATATTGATGCCAACTGTGGGCCACATGCTTTCCTTTTCATCCACCCCCTTCCATCAACTCTCTCTTCAATGATGAGTGTCATCCAGTTACACTGGCAattaggaaagaaaaaaaaaaggtacgtGCGCATTTGTTCTGAGAGAAATTTGATTAAACAGTGGTGGGATTAATGTACTGTTATTATATCACATTGTTGTGCTGCACAATGCATGTATATCGGGGTATATAAACATCACTGCCGAGGGGAGTTTGTGCTGGTGTTTTAAAGTTTTACATAAGCTGTGATTTTAAAGGGGAAATCTAATTAAAGGTGTAAATGATGAAGCAATGTAAACCGCATGCTCTTTTAGTTGCTTAGCACGCTTCACCAATACTAAAAccccttattaaaaaaaaaaaaaaaaggatgagcAAGTTGGTCCTTGATTTGCACATTTAACTGGATGATGCTTTTGGTTTAATTGTGAAACTGCGAGAGTGGCACCAGTGTGGTGATTTATAAAGCTTTCCAAAGTGTCTAATGGGACAACTGAACAGAGCATTTGCATATTGGATGAGGCACAGAATGGAAGAGGGAAAGAAAGAAGCATAATAAAAAGGCGTCAACTGAAAAAAGTGATATCTACAGTATATTATAGGCAGGGTACTACTGTT

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0019184 nonribosomal peptide biosynthetic process biological_process
GO:0017109 glutamate-cysteine ligase complex cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194889

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015724 lncRNA downstream 228748 37027924 ~ 37128570 (-) True XLOC_008047
TCONS_00016446 lncRNA downstream 443961 36909467 ~ 36913357 (-) True XLOC_008046
TCONS_00016445 lncRNA downstream 765585 36588971 ~ 36591733 (-) True XLOC_008043
TCONS_00015712 lncRNA downstream 979054 36365242 ~ 36378264 (-) True XLOC_008039
TCONS_00015706 lncRNA downstream 1112414 36206233 ~ 36244904 (-) True XLOC_008036
TCONS_00016449 lncRNA upstream 689132 38107500 ~ 38108201 (-) True XLOC_008050
TCONS_00015733 lncRNA upstream 1352088 38770456 ~ 38776346 (-) False XLOC_008051
TCONS_00016081 lncRNA upstream 1410435 38828803 ~ 38830442 (-) False XLOC_008054
TCONS_00016080 lncRNA upstream 1410435 38828803 ~ 38830442 (-) False XLOC_008054
TCONS_00016079 lncRNA upstream 1410435 38828803 ~ 38830442 (-) True XLOC_008054
TCONS_00015721 mRNA downstream 493886 36765612 ~ 36863432 (-) False XLOC_008045
TCONS_00015722 mRNA downstream 494573 36766647 ~ 36862745 (-) False XLOC_008045
TCONS_00015723 mRNA downstream 558038 36769474 ~ 36799280 (-) True XLOC_008045
TCONS_00015720 mRNA downstream 594016 36752033 ~ 36763302 (-) True XLOC_008044
TCONS_00015718 mRNA downstream 920069 36428441 ~ 36437249 (-) False XLOC_008042
TCONS_00015728 mRNA upstream 1344609 38762977 ~ 38783567 (-) False XLOC_008051
TCONS_00015729 mRNA upstream 1344613 38762981 ~ 38783608 (-) False XLOC_008051
TCONS_00015730 mRNA upstream 1344614 38762982 ~ 38783619 (-) False XLOC_008051
TCONS_00015731 mRNA upstream 1344719 38763087 ~ 38783556 (-) False XLOC_008051
TCONS_00015735 mRNA upstream 1377150 38795518 ~ 38809561 (-) True XLOC_008052
TCONS_00015719 other downstream 920079 36430243 ~ 36437239 (-) True XLOC_008042
TCONS_00015701 other downstream 1503671 35571545 ~ 35853647 (-) True XLOC_008033
TCONS_00015693 other downstream 1951595 35392747 ~ 35405723 (-) True XLOC_008028
TCONS_00015641 other downstream 3879331 33473804 ~ 33477987 (-) False XLOC_008000
TCONS_00015732 other upstream 1345298 38763666 ~ 38774885 (-) False XLOC_008051
TCONS_00015734 other upstream 1352262 38770630 ~ 38782985 (-) True XLOC_008051
TCONS_00015747 other upstream 1447204 38865572 ~ 38872565 (-) False XLOC_008056
TCONS_00015749 other upstream 1451016 38869384 ~ 38873145 (-) True XLOC_008056
TCONS_00015759 other upstream 1584408 39002776 ~ 39019334 (-) True XLOC_008061

Expression Profile

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