RNA id: TCONS_00015719


Basic Information

Item Value
RNA id TCONS_00015719
length 701
RNA type nonsense_mediated_decay
GC content 0.52
exon number 6
gene id XLOC_008042
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 36428441 ~ 36437249 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATAGCCTAGAACCCGTCGATTGAGTAATGAATCATGATTCAGCGATTATTTATCATTGTTTGTTTTCTTCCTCTAAATCAAGCTTCGCTGCCATTGGTGATAAACACATGGCGCTTTGAGGATGCAGCCGGCGCAGCCTGGAAGGCGTTGGAGAAGGGTAGCTCGGTTCTAGACGCGGTAGAGCGGGGCTGTGCGTACTGTGAGCTCGTGCAGTGTGATGGGAGCGTCGGCTTTGGCGGGAGTCCGGACGAGCGCGGAGAGACGACGCTGGACGCGATGATTATGAATGGAGATACGATGGAAGTAGGAGCAGTGGCAGATCTGCGCAGGGTCAAAAATGCTGTGGGTGTCGCTCGAGCAGTGATGGAACACTCAGAGCACACCTTCATAGTGGGCGAGTCGGCCACAATCTTTGCTCAAAACATGGGCTTCACGTCTGAGGACTTGTCAACTAACAAATCAATAGCTATTTTCTCTCAGTGGCTGCAGCAGAATTGTCAACCCAACTATAGAAAGGTATGGTTGTGATCGGAAGGCAAGGACAGGTAGCTGCTGCAACATCCACCAATGGAGCAACACATAAGATACCAGGCCGTGTAGGTGATTCACCAGTGGCTGGAGCCGGGGCTTATGCTGACAGCACAGTCGGTGGAGCGGCTGCCACAGGAGACGGAGACATCATGATGCGTTTCCTTCCAAG

Function

GO:

id name namespace
GO:0006517 protein deglycosylation biological_process
GO:0005764 lysosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003948 N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko00511 Other glycan degradation
ko04142 Lysosome

ZFIN:

id description
ZDB-GENE-040426-2311 Predicted to enable N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity. Predicted to be involved in protein deglycosylation. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in aspartylglucosaminuria and lysosomal storage disease. Orthologous to human AGA (aspartylglucosaminidase).

Ensembl:

ensembl_id ENSDART00000173350

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015712 lncRNA downstream 51979 36365242 ~ 36378264 (-) True XLOC_008039
TCONS_00016435 lncRNA downstream 156309 35932470 ~ 36273934 (-) False XLOC_008036
TCONS_00016440 lncRNA downstream 156309 36098204 ~ 36273934 (-) False XLOC_008036
TCONS_00016443 lncRNA downstream 156309 36205275 ~ 36273934 (-) False XLOC_008036
TCONS_00016444 lncRNA downstream 156309 36205275 ~ 36273934 (-) False XLOC_008036
TCONS_00016445 lncRNA upstream 151732 36588971 ~ 36591733 (-) True XLOC_008043
TCONS_00016446 lncRNA upstream 472228 36909467 ~ 36913357 (-) True XLOC_008046
TCONS_00015724 lncRNA upstream 590685 37027924 ~ 37128570 (-) True XLOC_008047
TCONS_00015725 lncRNA upstream 729289 37166528 ~ 37418368 (-) False XLOC_008048
TCONS_00015726 lncRNA upstream 735199 37172438 ~ 37418368 (-) False XLOC_008048
TCONS_00015715 mRNA downstream 17737 36398282 ~ 36412506 (-) False XLOC_008041
TCONS_00015716 mRNA downstream 17770 36398283 ~ 36412473 (-) False XLOC_008041
TCONS_00015717 mRNA downstream 20283 36406841 ~ 36409960 (-) True XLOC_008041
TCONS_00015713 mRNA downstream 32367 36393854 ~ 36397876 (-) False XLOC_008040
TCONS_00015714 mRNA downstream 32475 36394301 ~ 36397768 (-) True XLOC_008040
TCONS_00015720 mRNA upstream 314794 36752033 ~ 36763302 (-) True XLOC_008044
TCONS_00015721 mRNA upstream 328373 36765612 ~ 36863432 (-) False XLOC_008045
TCONS_00015722 mRNA upstream 329408 36766647 ~ 36862745 (-) False XLOC_008045
TCONS_00015723 mRNA upstream 332235 36769474 ~ 36799280 (-) True XLOC_008045
TCONS_00015728 mRNA upstream 2325738 38762977 ~ 38783567 (-) False XLOC_008051
TCONS_00015701 other downstream 576596 35571545 ~ 35853647 (-) True XLOC_008033
TCONS_00015693 other downstream 1024520 35392747 ~ 35405723 (-) True XLOC_008028
TCONS_00015641 other downstream 2952256 33473804 ~ 33477987 (-) False XLOC_008000
TCONS_00015649 other downstream 2952511 33475820 ~ 33477732 (-) False XLOC_008000
TCONS_00015628 other downstream 3085270 33340138 ~ 33344973 (-) True XLOC_007991
TCONS_00015732 other upstream 2326427 38763666 ~ 38774885 (-) False XLOC_008051
TCONS_00015734 other upstream 2333391 38770630 ~ 38782985 (-) True XLOC_008051
TCONS_00015747 other upstream 2428333 38865572 ~ 38872565 (-) False XLOC_008056
TCONS_00015749 other upstream 2432145 38869384 ~ 38873145 (-) True XLOC_008056
TCONS_00015759 other upstream 2565537 39002776 ~ 39019334 (-) True XLOC_008061

Expression Profile

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