RNA id: TCONS_00016440


Basic Information

Item Value
RNA id TCONS_00016440
length 2938
lncRNA type antisense_over
GC content 0.37
exon number 7
gene id XLOC_008036
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 35932410 ~ 36273934 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCGCGCAGCCAGCGCACTGACTGATTCAAATCTGTCAACGGCAGCACATGCCTGACTTTACTATAAACGTAAACTATGGTGAAGCGAAAGAAAACACAACTTGAAAAGATAAACAACACAATTTCtctgCAGGTGGCGATGTCAAACAGCAATTATAGAATGCCGCAGTCTCGAGAATGCAGGTGTTTACTGTCCTCGTTGAGCATCGACGAGCCCGTGGAACAGTTTAGCATAAAGAGCGAACAGTCATTACTACTATTCAGTTGAGGATACCTCTTCTTCACTGGatttaaaagagtaccccaacaatgactgaagccacaaacacgaggagaacatgccaacaggaccagccaggactcaaaccagcaccttcttgctgtaagatGTCAGATGGCGGAGGGGTTGCAGACGGAGGGCTGGAGCCAGTTCAATATCTTCTCACCTGTGCCTTTAGAGGACATAATGCCTTGAGCCGGGATGATTCTGAACAGAACACTGAACTTCATGTGTGTCCGTCTCTCACTGTAAGACCACTGGACTTCTGCTAAGACATTACACAGAATTCCTGATAAAGCTGACTGCTGGTCAACAACAGCTTCCCTCAGATCAAGATGTGTTGCTGAAGGGGGGAAGCAAGGCATGAGAAGGCGAGTTTCAAGTTTTCCCAGAGCTTTGTTGGAGGCAACAACAGAAAGAAGCTCAGTCTAGACATGCAATTGTACACAAGAAAAAAGGAGCAAGAAATTACTGGATTATACATGCAGGAAAGAGTAAGCTCTGCGCTACTTTGTTGGGCTTAGCGTGTATGTCAATGTCAATGGCGCTTGAAAGATCCCCCTGAAGTGAGGCTGATAGTTAAAGATGTACGTCATACTGTTGACcgtaaatacatacattcctcCGAGAGGTAGATTGACAAGGTGTGGCATTGGCTGCTTCCTGAGTAAATAAGCaacaggggaaaaaaaagagattCAGCGTGTGAGCGGAGCTCTGTTTGAGAAGGCCACCTTAGAGATCAAGTTCAGGAAGAGACGCTTTCTAGACCCTTCATATTCTTCTAGTCTTATATTCTGTTCTCTCTTACACTTGTTCTGCTTTTTGTATTTGACCAACTGCGACTAGTCATCATAGCGCTCATATATATTTGCTTTTTTGCTGATTATAGTTGCTTGTGTTTTATGAGTTGTTGATAAAGTTCCTTTTTATCAGTGTTTAACAACTTGTAATgttattgtaattaattttattttaaatgtatgtaatttgTATTTCACATTATGACTGTTTTGTTgtattattgtaattaatttaCTAACACTCCTTATGATATTTTCTActctatctgaaaaaaaaaactcactctgGTTCTCCCACACTgacatttttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttattattattattattattattattattattgttataattgttattattatttttggcattcttattttggtcccactttattttaGGTGTTCTTCACTTCTAGTTACTTGTAAACACACTCATTGTGTTCATAAACAATAAGTGGGATATGGTACATATAGTAAGCGGTTTTAAGGGTAGGTTTAGGCAAGGGATAGGTCAACAGTCTagttatacattttattacagaTTTTTAATTACAGATGTACTTACATGcagataattttttaaatattagtttattgtaaaataacaagtGCATTGTAccaaatgattcattaaaatgTAAGTTTATTGTAATTAAGGCCTCTTAATATAAAGtgatatgcttttttttaaatgaaataacttTAGAATTGCTGTTACTTTCTAATCTAcattcttttttgtctttttcttatttttataaataattactttGGTCCATCTTCACTATAACTTTTGAATCTGTTCCCTTTTGCTTTCAGCAAGAGACCTCATATCAggctttttgtttgctttttaaaaaggcttaatttattctttaaagcTTAATTTATGCCTAATTGGTTTGGTGAGACTTTTTTCTGTAAATTGTATTTGTGATTATACAGTAAGTATATTCAGAGATGATCTTGTTCACAGCTGATTTATGACACTTGGAAAGTAAAAACGTAACAAATGTGAGTCCAGGATTTTTAAGTCCATGATTTCCGACGGTTGACCTGCCAGCCTAAGTCGGAGCCTGGCTGTTTAATACcttaaaaacatacatacacatttcaAACTCAATTCTGAAACATATTAGCAACCAATTTAGGGAGCACAGGATAGGAGTAAGGTGTTCAAACTTGCGAGTGCCAGTAAGAAGCCTAGCGGCTGCATTTTGGACCACTTGAGACGATTTATAAGGGGTTGGCCAATACCCACATAAATTGAGTTGCAAGTATCCAAGCGTAATAATACAAAGGCATGGATTAATCTCTTTAACGTCGCATGGGTGTGTTGAAATTCAAAATgatctttctttctctttctgtgtGGTTAAGTGACACTCACTAGGTGTCATCTGGTTATTTCCCTATTCTTTTCCTCTTGTTGCTTTGATTACTTCTATGGCTTTTATTTGTACAGTAATTCACTTTAGATAAAggtgtctgctaaatgattaaacATAAATGTAAACAACCTGCTAAAATCCCTAGTTTCAGTCTATCAAAATTAGATTTTGAATATTCATATTGCGATTTGTTGCTGCGGCTCTGAATGTTACGGAGTGAAACTTGTACCGTGAATTGTTTTATTTACCGTGAGAGGATGCAGCGAGAGAGAATTTGACCTTTAAGACCAAGCTGCTTTCTCGATTGATTAAAATGTCAGCTTAATTACAGCTGGAGCTGAACTGATGCCTCTGGTTTCTGATGTTTCTATTGCCCAAAGTAAAGCAACATGAAGCCCGAGGGCAAGCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016433 lncRNA downstream 601676 35492150 ~ 35496528 (-) True XLOC_008031
TCONS_00015696 lncRNA downstream 687107 35410089 ~ 35411097 (-) False XLOC_008029
TCONS_00015695 lncRNA downstream 687107 35410089 ~ 35411097 (-) True XLOC_008029
TCONS_00016078 lncRNA downstream 750209 35347268 ~ 35347995 (-) True XLOC_008027
TCONS_00016077 lncRNA downstream 750247 35346285 ~ 35347957 (-) False XLOC_008027
TCONS_00015712 lncRNA upstream 91308 36365242 ~ 36378264 (-) True XLOC_008039
TCONS_00016445 lncRNA upstream 315037 36588971 ~ 36591733 (-) True XLOC_008043
TCONS_00016446 lncRNA upstream 635533 36909467 ~ 36913357 (-) True XLOC_008046
TCONS_00015724 lncRNA upstream 753990 37027924 ~ 37128570 (-) True XLOC_008047
TCONS_00015725 lncRNA upstream 892594 37166528 ~ 37418368 (-) False XLOC_008048
TCONS_00015703 mRNA downstream 205437 35884853 ~ 35892767 (-) True XLOC_008035
TCONS_00015702 mRNA downstream 215185 35876876 ~ 35883019 (-) True XLOC_008034
TCONS_00015700 mRNA downstream 425314 35567321 ~ 35672890 (-) False XLOC_008033
TCONS_00015698 mRNA downstream 592667 35499678 ~ 35505537 (-) False XLOC_008032
TCONS_00015707 mRNA upstream 5892 36279826 ~ 36320506 (-) False XLOC_008037
TCONS_00015708 mRNA upstream 5941 36279875 ~ 36320300 (-) False XLOC_008037
TCONS_00015709 mRNA upstream 5941 36279875 ~ 36325558 (-) True XLOC_008037
TCONS_00015710 mRNA upstream 54491 36328425 ~ 36345175 (-) True XLOC_008038
TCONS_00015711 mRNA upstream 74615 36348549 ~ 36378494 (-) False XLOC_008039
TCONS_00015701 other downstream 244557 35571545 ~ 35853647 (-) True XLOC_008033
TCONS_00015693 other downstream 692481 35392747 ~ 35405723 (-) True XLOC_008028
TCONS_00015641 other downstream 2620217 33473804 ~ 33477987 (-) False XLOC_008000
TCONS_00015649 other downstream 2620472 33475820 ~ 33477732 (-) False XLOC_008000
TCONS_00015628 other downstream 2753231 33340138 ~ 33344973 (-) True XLOC_007991
TCONS_00015719 other upstream 156309 36430243 ~ 36437239 (-) True XLOC_008042
TCONS_00015732 other upstream 2489732 38763666 ~ 38774885 (-) False XLOC_008051
TCONS_00015734 other upstream 2496696 38770630 ~ 38782985 (-) True XLOC_008051
TCONS_00015747 other upstream 2591638 38865572 ~ 38872565 (-) False XLOC_008056
TCONS_00015749 other upstream 2595450 38869384 ~ 38873145 (-) True XLOC_008056

Expression Profile

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