XLOC_008063


Basic Information

Item Value
gene id XLOC_008063
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 39881585 ~ 39883088 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016450
CACCCGGCCACCTAGGTGCAGAACAGGATGGACTTTGATCACCTGCAACAGCGACGAAGTGAAAATTGACagacagaaaaagagagagagagagaaaagaaggaAAGACGTCAAACAAGAGGTATTTCAGGAGTTCGTAACCAATTATCCACTCTGAAACTCTCAGTGTTGTCAAACCTCAGCCCACACACTCatcagaaaaagaaagagaaaggctgaaagagagagagagagagagagagagcgacacCGAGCACAAGAAAGAGACAGAATAGAGAGAAAGAGCACTGGTGAGGTTTAATCTACACACTCTCTTCTCTCCTAAATGTCAGTCTTATTCAAACAGATGTCAGGGAGACTGGGCCACAGAGCTGCTGGATGGAGTTGGTGAGCAGGCAGCGGTGGACGAATGGCAGCCTCTGTCATGGGGCAGCGCTTGGGGGACTCGGGAGCCCCGCTGAGTGGGAGACAGcgacgtgatgatcccaaggattccatatccgggaccaggccatatcctgagctgctgctgcgttgatggtcgtggggagtggaggacatgagtctgattccagcgacgctccagggacagacgagtcttcattgaggccatcttccagcataaaccacggcgaatgaagttctgcacaagacttttggttagcggagaaattaaaatggtcgtgcccaactgagtctggttctctcaaggttttttttcttcactcccatcaggtgaagtttttttttccctctccgctgtcgccactgcctcgca
>TCONS_00016451
CACCCGGCCACCTAGGTGCAGAACAGGATGGACTTTGATCACCTGCAACAGCGACGAAGTGAAAATTGACagacagaaaaagagagagagagagaaaagaaggaAAGACGTCAAACAAGAGATGTCAGGGAGACTGGGCCACAGAGCTGCTGGATGGAGTTGGTGAGCAGGCAGCGGTGGACGAATGGCAGCCTCTGTCATGGGGCAGCGCTTGGGGGACTCGGGAGCCCCGCTGAGTGGGAGACAGGTTTGATACAGCATGACACCTTACTTATTCATGCCCTCTTATTAGACCTCCGCACTGACACGGGGGATCATGGGAGAAACTTTTTTGTAGGATGAGATGAAGCCCGAAAAAACAGTGCAGGGACAAATCAGTGTTGCTGAGCATGCGGGTATATCGAGATTAGGAACTTCTTGATGTGGAGATCTGGACCCTTCCTGCTCAGAGAAGTGATGTTCTTATGGCATGTTTTTCTTATCGGGATTTTCTAATGATGCTgagcttttatttttatgtattttttatgcatACAGTATATATCTCACTACATCCCTTGAGAATTTGTAATGACAAGCAGGTTTATGCAAGCATGCATGGACAAGGacttatttttatacatatacagttgaagtcagaattatgagccctgctga

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016450 False 778 lncRNA 0.50 2 39881585 39883088
TCONS_00016451 True 657 lncRNA 0.46 2 39882207 39883088

Neighbor

gene id symbol gene type direction distance location
XLOC_008062 BX511013.1 coding downstream 165221 39712697 ~ 39716364 (-)
XLOC_008061 glra4a coding downstream 807046 39002116 ~ 39074539 (-)
XLOC_008060 gla coding downstream 934777 38932441 ~ 38946808 (-)
XLOC_008059 btk coding downstream 951700 38891722 ~ 38929885 (-)
XLOC_008058 zgc:101583 coding downstream 991745 38882652 ~ 38889840 (-)
XLOC_008064 pcdh19 coding upstream 417873 40300961 ~ 40390768 (-)
XLOC_008065 FP236502.1 coding upstream 564280 40447368 ~ 40447484 (-)
XLOC_008066 CABZ01014721.1 coding upstream 659822 40542910 ~ 40543026 (-)
XLOC_008067 NA coding upstream 842942 40726030 ~ 40728200 (-)
XLOC_008068 elf1 coding upstream 862745 40745833 ~ 40850481 (-)
XLOC_007641 CU855896.1 misc downstream 37473745 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 37474154 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 37474513 2406945 ~ 2407072 (-)
XLOC_008055 BX088707.1 non-coding downstream 1034210 38845504 ~ 38847375 (-)
XLOC_008054 NA non-coding downstream 1051143 38828803 ~ 38830442 (-)
XLOC_008050 NA non-coding downstream 1773384 38107500 ~ 38108201 (-)
XLOC_008048 FP102806.1 non-coding downstream 2463217 37166528 ~ 37418368 (-)
XLOC_008069 BX510995.1 non-coding upstream 944838 40827926 ~ 40828042 (-)
XLOC_008071 CR388141.1 non-coding upstream 1183910 41066998 ~ 41067114 (-)
XLOC_008049 NA non-coding downstream 2492171 37387498 ~ 37389414 (-)

Expression


Co-expression Network