XLOC_008068 (elf1)


Basic Information

Item Value
gene id XLOC_008068
gene name elf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 40745833 ~ 40850481 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015766
AGAGGCCTGTCAGTTAGGGTCATCTCGCTGCTGCTGgtTTAGATGCCCCAGACGCAGCTGGAGCGAGAAAACGCCTCCTCCATCTCGCGGCCGCCATCGCTCTGAGTCCTCTGCCATCCCGTCCGTCATCTGGAGGGGGAAAAAAGTCATCAGCTTGCAGGAGCAAAAAAAGGGAGCTCTGTTTTTAACCTAACAGTGGCTCTCATTTTGTGAAAGCAGCAGACTAGGCTTGTGTTCCTGCTTCAGAGTGTGGTGTGGTGTGGAGCGAAGCGGTCCGGGGAGTGCGTGGAGGGGTAGGAACCCTCTGCCTGTCAGCCTGTgtcctcccctctctctctcccgaAAAACACCATGACCACTGTGGTCCAGGCCAACGAGCTTGTCTTTGAGTTCGCCAGCAATGGGATGGATGAAATCAATCAGCTGGACGACCCTTCGGTGTTTCCAGCGGTGATTGTGGAGCAGGTGCCCGCCGCCGACCTCATGCAGGTGTACTCTGGGCTGGAGGCAGACGAGGTGACTAATGGCATCATGGTGGACGCCATTCAGGACGTGGTGGAAGAGAACATGATGGGAGACGTGGGGCTGTCTGTAGAGACCCCAGTCTCAGGGGGAGAAGACAACATGGAGACCATCGAGGCGGCTGAAGCCCTGCTGAACATGGAATCTCCCAATAACATCCTGGATGAGAAGCGCATGATTCACACATATGGGAATATCCTGGAAACAGACCTGAGCTACATCTCCCTCCGTCCAGAGCATCTCTCAAATGGCATGGATGTTGCCCACGATGATGAGACGTCCTCTTTGGATGAAGTCCCTCAGAAAAACTTTTCCAAGCCTGCCAGGAAAACCAAAGTGCGCAAACCAAGACCAGCGCGGCCATGCTCTCCAATAACCAATCCATCTCTCCCGCTGAAGAAGAAAAGCAAAGAGGGCAAAGGTAACACCATCTACCTGTGGGAGTTCCTGCTGGCCTTGCTGCAAGACAAAAACACCTGTCCCAAATACATCAAGTGGACGCAGAGAGAGAAGGGCATTTTTAAGCTGGTGGACTCCAAGGCTGTCTCCAAACTGTGGGGAAAGCACAAAAACAAGCCTGATATGAACTATGAAACCATGGGCCGAGCACTCAGGTACTATTACCAGAGGGGTATATTGGCCAAAGTGGAAGGACAGCGGCTTGTTTACCAGTTTAAGGAGATGCCAACAGATCTGGTCATTATTGATGAAGACGACGGTCAAGGGGACGATGGTGGTGCAGGTTACGGAGGGCACCGGGCAGCTCCTCACGGACGGGTGGGCCGTGGCTCATCACGTTCACAGGGGAGGAACACGCAGGTGAAGACAGTAAAGAGGGAGATGAGTCCCGGTCTGAACAGCAGGAACGGAAAACAAGCCGAACAGCTTCTGCAGACGGTTCATGTCCTCCAGCCAAATCAAGGAGCTGCTGTCCCAGCGCAGACACACTCCGTAAGgactATAAATATGCCAGGCTCTGTTCCCATGGTCCTCACGTCAGGAGCTCAAGGAGGAGGTCCAATGACCCTGCAGACCCTGCCGCTGTCCTCTGTCCTGACCAACGGGGATTCCTCGACTCACGCCTCCCCACCACGGGTCATACTCCACACAGTGCCTTCAACCAGCCCTGGAGGTAAAGATGTGCTCACCATCCAGACAGCCTCTCTGACCACAGACAGTCTCCACTCTCAGCAGCTCCTGGTGTCTACTTTAAGCTCATCCAGCGGAGGGGTCATCAGCACCACGCCACAGCAGACCGCATCTCTGAACGGCATCACCCGCTTGGTCACTCTCAATGCCAACGGGCAGCCTGTTGTGGCTCAACAACCCGGCACGGTCATCGCCACTGTCCTGAAGCCCAGTGAGTATCAAAGCCTGCAAGTGAAGGAGGAGATCAGCGATCCTCAATACTTCCAATCGCTGGTCAACAACAGTCCAAGCTTTGCTTCATTCTGCAAGGACGAGATTGCGGAGGGAATGGCGGAGATGAGCTACAGAACTGTGATCATCAACACTGCAGGACAGGAGCTCAGCCAGAGCCTCAACGGACACTCGCAGCTGGCCAGCAGCCCCAGTGAAGGCCTCACCCCAGTGGAGGAGCTGGAAGTGCGGGGTGAAGTGGCTCTGCATCCGGAACCTGAGGCCAAGGAGCTTTTGGAGAGCTCTCAAGGTCTGCAGGAGCTCCCGGTCACCATGCAAATCCCTGCATCCCACTTCATCCAGGTAAAAGCCGAGCCCACTGAGACCTAAACTATCAGCGCAAGAATGTGGACACAATCTACCAACATATAAACAGGATTTTATTTCAGTGGAGCAGATTGTTTGTAATTTATTGCTCTTGATTGTTTAGAAAGAGGCGCTGCCTGCAAGACCGTTTACTTAAAAGTTATTTTGTGCCTAAATTCGAACCTTGAGGGATATCAAGCAAGATGTCACGACGAAAGCTCTTCGGTTTGCTTTTCGATAAACTTCCAACAGGAGAGCAGCCATTCTTTACCCAGGGATATTCCCACCGTATGTGCCAGTTGAGATGCTTCTGTCTCTTCTCATCTCCAACGacaaaccaaacaaataaacagaggGACCAAAGGAAGAGTTGGTGGGAAGCCAAATCAAACCAACAACGCATCATTGACTTTacgagaaaaacacacacacagttgattgtCACACACAAGATGGAAGAgcatttggtttgttttttattcCACATGTAGCCATATTAGCCTTTTGGAAAGAGAGAGTTCCTAGGTGGTCAATGCTTTGTTTTGGAAGTGATGCTTTTGAAGGGGAAGATTATATGATTCATTCTGTTTTTAATACGAAATTATGACATTATCTCATCCCCCTCATGCCGTCAGAACCGACAAGGCCATTATTTTTCCATCACACATGAGTTTAAAAGCACTGCGCTTTTTATGGAAATGGGCATTGCCTGTCCAAAGAGACAGATCTAGAAGACTTTGTTTGTATATAGCACCAGACTAGAGAATATAGTGACAGTTTCCAAAATCATCTGCTAAAGTATTTCCCCATTATAACCTTGTTCCTATGAAAAGGAATGCAgtatatatatctaaatatatgaatataaaatatacaactgAGATTTGATTTATGgccacaaatttatttattttctgaatttCAAATTTCTGTATAAAAGACTTTTTTAACAACACAAATATGAGGGAAAATATGCAGTATGTAGAGCTACAGTCATTTAACCCATAAGAATCCAGTGTGCGTGTTTATTGCGAGCTGTATTTTTCCAGTTTAAAGCATTCCTTGTAATCTTTtcatattttatctatttttcaaCATAAGGGGATCCGAACTTACAGTAGCTTTATGAGATTGAGCTATCATGCTGTTCTTACTGTGATGTGTTGTTTAAAGCCATTTTTTTACAGATCTTATGTGCTAGAATGTTCTTCTGTCTTTAAGCTGTCATACTTTTACTCTGCGTCGAATGACTAGTTCAATCGATGCCTTTCATGTCGGTTTTTCAGATCACCGATGGTCTCGGCATTGATTTCTCTGTCTGAGACATTTAGCTAGAtagttcaaatgtatttatttgtagttGATGTGTCTGTCCCTTTCTCACTTCATTTATATCCAATGAACCCAGATTCATAATAGAAGCATCTGCACAAGTAAACCGAGCGGACGGTGCAGCCATATCTGAAACTAAATCTGTGCTAAATTGCACTGAAGTTCTAGGTCTAAATGTAGACCGGACTTCCAGAAGCTGATCATAGGCAACTTTTGCCCTTAATTATTTTAGACTAACACCAAAACTCTGGTGCTGCTCTGACAATCGTAGCTGTATTTTGTACTATGCATCAAGACAATCGGTAAGCTCATTTATAATAGAAGAAAGATGTCCTTTTGGCCACCGTGTGATCTTCGAACCTGGTTTTGGGTTTGAAATGTTGGTTTTGACTGCAAGCTTTATGCTTTGTAGGTTTTGGGGTAAAAGTATGCAAGTGCTCACCCAATAATTTCAGCTTGCCTTTTCTTGGGGCTTTTCTTTGTTTCCAATTGTCTTTTAGTAGAGtagatttttgttttctataaaaagaaaaagtaaaccaaagaataaaaaaaaagatactgtAATAAAACCATCTTTGCCTTAACGCAAA
>TCONS_00015767
AGACACACCCTTggattatatatacatacatatttttactCTCATCAACGTAATCTTTTCTTTTtaagattatatttttatatctcaTTTTTTTTAACGGTGATTACTTGTATGTATTCCACCAAAACCATGGAGTTTGACATGAAGCCACTGAACGTTTAAGgtTTAGATGCCCCAGACGCAGCTGGAGCGAGAAAACGCCTCCTCCATCTCGCGGCCGCCATCGCTCTGAGTCCTCTGCCATCCCGTCCGTCATCTGGAGGGGGAAAAAAGTCATCAGCTTGCAGGAGCAAAAAAAGGGAGCTCTGTTTTTAACCTAACAGTGGCTCTCATTTTGTGAAAGCAGCAGACTAGGCTTGTGTTCCTGCTTCAGAGTGTGGTGTGGTGTGGAGCGAAGCGGTCCGGGGAGTGCGTGGAGGGGTAGGAACCCTCTGCCTGTCAGCCTGTgtcctcccctctctctctcccgaAAAACACCATGACCACTGTGGTCCAGGCCAACGAGCTTGTCTTTGAGTTCGCCAGCAATGGGATGGATGAAATCAATCAGCTGGACGACCCTTCGGTGTTTCCAGCGGTGATTGTGGAGCAGGTGCCCGCCGCCGACCTCATGCA
>TCONS_00015768
taacattgtaaACACTGCTCACATAAATAAAGTCTTTTGATTGGTCTACTGGACGCCAACGTCACTCTTCCCATCTACAAGCCTGAAAGACGCGTCGCTCCACTGATTGCATGCATGGGAGCGTTTGCAAGTTTGACGCGTTGTCGCTTGCGGTGCAGATGCCGAGCGCTGGACCAATCGCTTTCGAGGGAAAATGTGAGCGCAAGGAATTCCCCACACAGTGAAAACAGTGAAACCTTATGTTAGGCAAAAGAAAACCAAGAAAGCTCGTCCAGGGCTTCAAAACAATGCGCTTTTAGAAGATTCCGTCTTTGGCAAAGAGGATAAAGTCACTACGTTTCATCAGGACGCAAGACGAGGATTCGGATAATAACAGGAATTGTTTCATTGAAATAAAAGTCACCTCACGTTAACCTTTAAACCTGAAGACCATGGGGAAGACGAAGgtTTAGATGCCCCAGACGCAGCTGGAGCGAGAAAACGCCTCCTCCATCTCGCGGCCGCCATCGCTCTGAGTCCTCTGCCATCCCGTCCGTCATCTGGAGGGGGAAAAAAGTCATCAGCTTGCAGGAGCAAAAAAAGGGAGCTCTGTTTTTAACCTAACAGTGGCTCTCATTTTGTGAAAGCAGCAGACTAGGCTTGTGTTCCTGCTTCAGAGTGTGGTGTGGTGTGGAGCGAAGCGGTCCGGGGAGTGCGTGGAGGGGTAGGAACCCTCTGCCTGTCAGCCTGTgtcctcccctctctctctcccgaAAAACACCATGACCACTGTGGTCCAGGCCAACGAGCTTGTCTTTGAGTTCGCCAGCAATGGGATGGATGAAATCAATCAG
>TCONS_00016453
GTCGCTTGCGGTGCAGATGCCGAGCGCTGGACCAATCGCTTTCGAGGGAAAATGTGAGCGCAAGGAATTCCCCACACAGTGAAAACAGTGAAACCTTATGTTAGGCAAAAGAAAACCAAGAAAGCTCGTCCAGGGCTTCAAAACAATGCGCTTTTAGAAGATTCCGTCTTTGGCAAAGAGGATAAAGTCACTACGTTTCATCAGGACGCAAGACGAGGATTCGGATAATAACAGGAATTGTTTCATTGAAATAAAAGTCACCTCACGTTAACCTTTAAACCTGAAGACCATGGGGAAGACGAAGGGAGGTGACCGCTGCAGAGTAAAGCCTGTGGTTATGTTGAGGATGGCTCTACAGAGGTTACGGTTATGA

Function

symbol description
elf1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell and periderm. Orthologous to several human genes including ELF4 (E74 like ETS transcription factor 4).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-335 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell and periderm. Orthologous to several human genes including ELF4 (E74 like ETS transcription factor 4).

Ensembl:

ensembl_id ENSDARG00000020759

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015766 False 4172 mRNA 0.47 9 40745833 40797117
TCONS_00015767 False 615 mRNA 0.49 3 40759710 40821411
TCONS_00015768 False 833 mRNA 0.50 2 40774646 40850481
TCONS_00016453 True 373 lncRNA 0.46 2 40842072 40850339

Neighbor

gene id symbol gene type direction distance location
XLOC_008067 NA coding downstream 17633 40726030 ~ 40728200 (-)
XLOC_008066 CABZ01014721.1 coding downstream 202807 40542910 ~ 40543026 (-)
XLOC_008065 FP236502.1 coding downstream 298349 40447368 ~ 40447484 (-)
XLOC_008064 pcdh19 coding downstream 355065 40300961 ~ 40390768 (-)
XLOC_008063 NA coding downstream 862745 39881585 ~ 39883088 (-)
XLOC_008070 drp2 coding upstream 69255 40919736 ~ 41243180 (-)
XLOC_008071 CR388141.1 coding upstream 216517 41066998 ~ 41067114 (-)
XLOC_008072 cenpi coding upstream 394396 41244877 ~ 41272122 (-)
XLOC_008073 tmem35 coding upstream 425826 41276307 ~ 41285392 (-)
XLOC_008074 arl13a coding upstream 442629 41293110 ~ 41308561 (-)
XLOC_007641 CU855896.1 misc downstream 38337993 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 38338402 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 38338761 2406945 ~ 2407072 (-)
XLOC_008055 BX088707.1 non-coding downstream 1898458 38845504 ~ 38847375 (-)
XLOC_008076 NA non-coding upstream 581032 41431513 ~ 41440841 (-)
XLOC_008080 BX247870.1 non-coding upstream 716922 41567403 ~ 41570590 (-)
XLOC_008081 BX247870.2 non-coding upstream 737332 41587813 ~ 41588865 (-)
XLOC_008083 NA non-coding upstream 1107220 41957701 ~ 41987798 (-)

Expression


Co-expression Network